Result for your query miRNA sequence
>hsv2-miR-h3
uuugggag

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1tttgggag8
MIMAT0010202hsv2-miR-H31........8100
MIMAT0036736oha-miR-1508_.......287
MIMAT0035980chi-miR-1508_.......287
MIMAT0035077efu-miR-1508_.......287
MIMAT0034205gra-miR482c8......._287
MIMAT0033393str-miR-8375-3p1......._787
MIMAT0033375str-miR-7880p-3p1......._787
MIMAT0032383ssa-miR-150-5p8_.......287
MIMAT0030034oar-miR-1508_.......287
MIMAT0029426ipu-miR-1508_.......287
MIMAT0027460hsa-miR-6780a-5p1_.......787
MIMAT0025482hsa-miR-6513-5p1......._787
MIMAT0025365ssc-miR-1508_.......287
MIMAT0025210ptc-miR64711......._787
MIMAT0025095mmu-miR-63521......._787
MIMAT0024217ggo-miR-1508_.......287
MIMAT0023170gma-miR393b1......._787
MIMAT0022806sha-miR-1508_.......287
MIMAT0022584ola-miR-1508_.......287
MIMAT0021784aca-miR-150-5p8_.......287
MIMAT0021250mtr-miR2643b-3p1......._787
MIMAT0020638mmu-miR-51278_.......287
MIMAT0018187hsa-miR-3913-5p1......._787
MIMAT0018608ame-miR-37391_.......787
MIMAT0018028vvi-miR3630-3p1......._787
MIMAT0017930aly-miR42412......._887
MIMAT0015774ppy-miR-1508_.......287
MIMAT0017721aly-miR3444a-5p1_.......787
MIMAT0017676aly-miR158b-3p7......._187
MIMAT0017422aly-miR158a-3p7......._187
MIMAT0013011eca-miR-1508_.......287
MIMAT0012748mdo-miR-150-5p8_.......287
MIMAT0013411mtr-miR2643a1......._787
MIMAT0009459mmu-miR-1982-5p1_.......787
MIMAT0008044ptr-miR-1508_.......287
MIMAT0006602cfa-miR-1508_.......287
MIMAT0006211mml-miR-150-5p8_.......287
MIMAT0007090oan-miR-150-5p8_.......287
MIMAT0022936mtr-miR393b-3p1......._787
MIMAT0026720hsa-miR-887-5p2_.......887
MIMAT0003845bta-miR-1508_.......287
MIMAT0003606xtr-miR-1508_.......287
MIMAT0001846dre-miR-1508_.......287
MIMAT0000853rno-miR-150-5p8_.......287
MIMAT0000451hsa-miR-150-5p8_.......287
MIMAT0000176ath-miR158a-3p7......._187
MIMAT0000160mmu-miR-150-5p8_.......287
MIMAT0036492tch-miR-188-3p8.g......187
MIMAT0036014chi-miR-188-3p8.g......187
MIMAT0034988efu-miR-93131......g.887
MIMAT0032936ppc-miR-8240-5p1.g......887
MIMAT0027920mmu-miR-7008-5p1.g......887
MIMAT0027770mmu-miR-6935-5p1.g......887
MIMAT0027744mmu-miR-6922-5p1.g......887
MIMAT0025818gga-miR-6708-5p1.a......887
MIMAT0025277ptc-miR482c-5p1.a......887
MIMAT0024042ptr-miR-31921.c......887
MIMAT0017700aly-miR774b-3p8......t.187
MIMAT0015553bmo-miR-33671......t.887
MIMAT0015382bmo-miR-3204a-3p1.a......887
MIMAT0015076hsa-miR-3192-5p1.c......887
MIMAT0014344ghr-miR2948-5p1.g......887
MIMAT0013199eca-miR-188-3p8.g......187
MIMAT0017297rno-miR-188-3p8.g......187
MIMAT0004613hsa-miR-188-3p8.g......187
MIMAT0004541mmu-miR-188-3p8.g......187
MIMAT0037076ssc-miR-9857-5p3_......_875
MIMAT0036894oha-miR-30c-1-3p2__......775
MIMAT0036271chi-miR-532-3p7__......275
MIMAT0036236chi-miR-450-3p2_......_775
MIMAT0036131chi-miR-30f-3p2__......775
MIMAT0036126chi-miR-30c-3p2__......775
MIMAT0036124chi-miR-30b-3p2__......775
MIMAT0036011chi-miR-186-3p6......__175
MIMAT0035562dvi-miR-193-5p3_......_875
MIMAT0035488bdi-miR94823......__875
MIMAT0035472sly-miR9477-3p1_......_675
MIMAT0035203dme-miR-9370-5p1......__675
MIMAT0035135efu-miR-30c2__......775
MIMAT0034344cfa-miR-88493_......_875
MIMAT0033852atr-miR85703_......_875
MIMAT0033132ppc-miR-8304a-5p2_......_775
MIMAT0032612ssa-miR-30e-3p2__......775
MIMAT0032602ssa-miR-30a-4-3p2__......775
MIMAT0032601ssa-miR-30a-3-3p2__......775
MIMAT0031716bbe-miR-705-5p3__......875
MIMAT0031012hsa-miR-80851__......675
MIMAT0030415hsa-miR-1273h-5p2__......775
MIMAT0032251rgl-miR7807a-3p1_......_675
MIMAT0029544ipu-miR-129b1......__675
MIMAT0029372lja-miR75451_......_675
MIMAT0031028oan-miR-30c-1-3p1__......675
MIMAT0028692mdo-miR-7341-5p6......__175
MIMAT0031090mdo-miR-30c-2-3p1__......675
MIMAT0028551mdo-miR-30b-3p2__......775
MIMAT0028503mdo-miR-30c-1-3p1__......675
MIMAT0028501mdo-miR-7266-3p1_......_675
MIMAT0028357mml-miR-7197-3p1__......675
MIMAT0028169dev-miR-D1-5p1_......_675
MIMAT0026436sbi-miR6230-5p2......__775
MIMAT0028109hsa-miR-7106-5p1__......675
MIMAT0027892mmu-miR-6995-5p2__......775
MIMAT0027888mmu-miR-6993-5p3__......875
MIMAT0027816mmu-miR-6958-5p2__......775
MIMAT0027726mmu-miR-6913-5p1__......675
MIMAT0027706mmu-miR-6903-5p1_......_675
MIMAT0027642hsa-miR-6871-5p3__......875
MIMAT0027554hsa-miR-6827-5p1__......675
MIMAT0027528hsa-miR-6814-5p6_......_175
MIMAT0027476hsa-miR-6788-5p2__......775
MIMAT0027470hsa-miR-6785-5p1__......675
MIMAT0027458hsa-miR-6779-5p2__......775
MIMAT0027456hsa-miR-6778-5p3__......875
MIMAT0027381hsa-miR-6740-5p3......__875
MIMAT0027363hsa-miR-6731-5p1__......675
MIMAT0027357hsa-miR-6728-5p1_......_675
MIMAT0025801gga-miR-6695-5p1_......_675
MIMAT0025742gga-miR-6645-5p1__......675
MIMAT0025625gga-miR-6559-5p1__......675
MIMAT0025178mmu-miR-451b1__......675
MIMAT0027315ppe-miR482d-3p7__......275
MIMAT0031169ppe-miR482c-3p7_......_275
MIMAT0027273ppe-miR482b-3p8_......_375
MIMAT0024340mml-miR-31222_......_775
MIMAT0023982cgr-miR-532-3p7__......275
MIMAT0023963cgr-miR-450b-3p3_......_875
MIMAT0023814cgr-miR-186-3p7......__275
MIMAT0022505mmu-miR-57103_......_875
MIMAT0022301hsa-miR-5591-5p1__......675
MIMAT0022077aca-miR-5408c-5p8__......375
MIMAT0021925aca-miR-30c-3p2__......775
MIMAT0021923aca-miR-30b-3p2__......775
MIMAT0021233mtr-miR52391__......675
MIMAT0027083bdi-miR5178-5p2_......_775
MIMAT0020628mmu-miR-51201......__675
MIMAT0020523ath-miR50193_......_875
MIMAT0021002gma-miR482c-3p7_......_275
MIMAT0020197dme-miR-4970-5p2__......775
MIMAT0020008sko-miR-4817-5p1_......_675
MIMAT0019857hsa-miR-4733-5p8_......_375
MIMAT0019849hsa-miR-4728-5p1__......675
MIMAT0019820hsa-miR-4713-5p8__......375
MIMAT0019007hsa-miR-3689c2__......775
MIMAT0018940hsa-miR-44253_......_875
MIMAT0018479csi-miR482a-5p3__......875
MIMAT0022976ssc-miR-30c-1-3p2__......775
MIMAT0018240gma-miR43512_......_775
MIMAT0018181hsa-miR-3689b-3p2__......775
MIMAT0018118hsa-miR-3689a-3p2__......775
MIMAT0016853hsa-miR-43001__......675
MIMAT0016551cin-miR-4031-5p6......__175
MIMAT0016222ppy-miR-13021_......_675
MIMAT0016214ppy-miR-12921__......675
MIMAT0015988ppy-miR-532-3p7__......275
MIMAT0015895ppy-miR-450b-3p1_......_675
MIMAT0015718ssc-miR-450c-3p2_......_775
MIMAT0019209hsa-miR-3156-3p6__......175
MIMAT0014984hsa-miR-31222_......_775
MIMAT0014919mmu-miR-3100-5p1_......_675
MIMAT0014760api-miR-30243......__875
MIMAT0014689hsv1-miR-H121_......_675
MIMAT0014686tgu-miR-30c-3p2__......775
MIMAT0015361zma-miR482-5p1__......675
MIMAT0013941ssc-miR-532-3p7__......275
MIMAT0017380ssc-miR-450b-3p1_......_675
MIMAT0013855bta-miR-28973__......875
MIMAT0013236eca-miR-532-3p7__......275
MIMAT0013221eca-miR-450b-3p1_......_675
MIMAT0013010eca-miR-1302e1_......_675
MIMAT0012969eca-miR-1302d1_......_675
MIMAT0012934eca-miR-1302b1_......_675
MIMAT0012907eca-miR-13021_......_675
MIMAT0012895eca-miR-18922......__775
MIMAT0012429dsi-miR-991-5p7_......_275
MIMAT0012277dps-miR-193-5p3_......_875
MIMAT0020913dme-miR-2492-5p1_......_675
MIMAT0012019bta-miR-2284h-5p6......__175
MIMAT0011765zma-miR2118f7_......_275
MIMAT0011757osa-miR2118r7_......_275
MIMAT0011744osa-miR2118e7_......_275
MIMAT0011165mdm-miR482a-3p7_......_275
MIMAT0011161hsa-miR-2116-3p7__......275
MIMAT0010013bfl-miR-7053__......875
MIMAT0008213ptr-miR-5327__......275
MIMAT0008152ptr-miR-450b1_......_675
MIMAT0008021ptr-miR-13021_......_675
MIMAT0007871mmu-miR-18922......__775
MIMAT0015269ssc-miR-30b-3p2__......775
MIMAT0006404mml-miR-532-3p7__......275
MIMAT0006334mml-miR-450b-3p1_......_675
MIMAT0026878mml-miR-450a-1-3p2_......_775
MIMAT0026832mml-miR-186-3p6......__175
MIMAT0031117mml-miR-30c-2-3p1__......675
MIMAT0026805mml-miR-30c-1-3p1__......675
MIMAT0007622gga-miR-17231__......675
MIMAT0007525gga-miR-1648-3p1__......675
MIMAT0007429gga-miR-15693......__875
MIMAT0007186oan-miR-1391-3p6__......175
MIMAT0007044oan-miR-30b-3p2__......775
MIMAT0006932oan-miR-186-3p6......__175
MIMAT0006912oan-miR-30c-2-3p2__......775
MIMAT0005758ssy-miR-513c7_......_275
MIMAT0005890hsa-miR-13021_......_675
MIMAT0022943hsa-miR-1233-5p3__......875
MIMAT0005323rno-miR-532-3p7__......275
MIMAT0005148ppt-miR1039-5p3......__875
MIMAT0005517dme-miR-997-5p6......__175
MIMAT0020890dme-miR-991-5p8_......_375
MIMAT0020849dme-miR-193-5p1_......_675
MIMAT0004364ppt-miR8932_......_775
MIMAT0004910hsa-miR-450b-3p1_......_675
MIMAT0026676mdo-miR-186-3p6......__175
MIMAT0003766dre-miR-735-3p8__......375
MIMAT0012534bta-miR-30b-3p2__......775
MIMAT0003512mmu-miR-450b-3p2_......_775
MIMAT0003495mmu-miR-7053__......875
MIMAT0004781mmu-miR-532-3p7__......275
MIMAT0004780hsa-miR-532-3p7__......275
MIMAT0026563mml-miR-30b-3p2__......775
MIMAT0022922ssc-miR-30c-3p2__......775
MIMAT0022903ptc-miR171h-5p3_......_875
MIMAT0022902ptc-miR171g-5p3_......_875
MIMAT0017183rno-miR-450a-3p3_......_875
MIMAT0017182mmu-miR-450a-1-3p2_......_775
MIMAT0022700hsa-miR-450a-1-3p2_......_775
MIMAT0031105gga-miR-30c-1-3p1__......675
MIMAT0026515gga-miR-30c-2-3p1__......675
MIMAT0001014ath-miR158b7......__275
MIMAT0017143rno-miR-186-3p7......__275
MIMAT0005442rno-miR-30c-2-3p2__......775
MIMAT0004719rno-miR-30c-1-3p2__......775
MIMAT0004674hsa-miR-30c-1-3p2__......775
MIMAT0005438mmu-miR-30c-2-3p2__......775
MIMAT0004616mmu-miR-30c-1-3p2__......775
MIMAT0004612hsa-miR-186-3p7......__275
MIMAT0004589hsa-miR-30b-3p2__......775
MIMAT0004550hsa-miR-30c-2-3p2__......775