| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttttagtg | 8 | ||
| MIMAT0034239 | gra-miR8786b | 1 | ........ | 8 | 100 |
| MIMAT0034238 | gra-miR8786a | 1 | ........ | 8 | 100 |
| MIMAT0028635 | mdo-miR-7317-3p | 1 | ........ | 8 | 100 |
| MIMAT0016819 | cin-miR-4200-5p | 8 | ........ | 1 | 100 |
| MIMAT0003434 | rlcv-miR-rL1-6-5p | 1 | ........ | 8 | 100 |
| MIMAT0033276 | ppc-miR-8357-5p | 1 | ......._ | 7 | 87 |
| MIMAT0026352 | bma-miR-5854 | 8 | ......._ | 2 | 87 |
| MIMAT0021244 | mtr-miR5248 | 2 | ......._ | 8 | 87 |
| MIMAT0019876 | hsa-miR-3591-5p | 1 | _....... | 7 | 87 |
| MIMAT0017625 | aly-miR840-5p | 8 | _....... | 2 | 87 |
| MIMAT0022464 | gma-miR4387e | 1 | .g...... | 8 | 87 |
| MIMAT0022687 | hvsa-miR-HSUR2-3p | 1 | ......a. | 8 | 87 |
| MIMAT0000999 | ebv-miR-BART1-5p | 1 | .c...... | 8 | 87 |
| MIMAT0036776 | oha-miR-190b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036392 | gma-miR9758 | 3 | _......_ | 8 | 75 |
| MIMAT0036238 | chi-miR-451-3p | 1 | _......_ | 6 | 75 |
| MIMAT0034356 | cfa-miR-8861 | 1 | __...... | 6 | 75 |
| MIMAT0034257 | gra-miR8739 | 8 | _......_ | 3 | 75 |
| MIMAT0034199 | gra-miR8765 | 1 | __...... | 6 | 75 |
| MIMAT0034129 | gra-miR8729 | 6 | ......__ | 1 | 75 |
| MIMAT0034093 | gra-miR8706b | 3 | ......__ | 8 | 75 |
| MIMAT0034092 | gra-miR8706a | 3 | ......__ | 8 | 75 |
| MIMAT0033887 | atr-miR8598 | 1 | _......_ | 6 | 75 |
| MIMAT0033886 | atr-miR8597 | 1 | __...... | 6 | 75 |
| MIMAT0033580 | sma-miR-8438-5p | 6 | __...... | 1 | 75 |
| MIMAT0033521 | sma-miR-8408-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032782 | ath-miR8183 | 1 | _......_ | 6 | 75 |
| MIMAT0032439 | ssa-miR-190b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030583 | prd-miR-7896-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030278 | bdi-miR7765-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028549 | mdo-miR-7286-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028440 | mmu-miR-7236-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028347 | mml-miR-7193-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025798 | gga-miR-6692-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027265 | pgi-miR6141 | 8 | _......_ | 3 | 75 |
| MIMAT0023595 | nta-miR6024 | 1 | ......__ | 6 | 75 |
| MIMAT0023594 | sly-miR6024 | 1 | ......__ | 6 | 75 |
| MIMAT0023593 | stu-miR6024-3p | 1 | ......__ | 6 | 75 |
| MIMAT0023280 | osa-miR5808 | 6 | _......_ | 1 | 75 |
| MIMAT0022063 | aca-miR-5441 | 1 | _......_ | 6 | 75 |
| MIMAT0022020 | aca-miR-5406-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021940 | aca-miR-34a-3p | 8 | __...... | 3 | 75 |
| MIMAT0021263 | mtr-miR5263 | 8 | _......_ | 3 | 75 |
| MIMAT0020190 | dme-miR-4966-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019753 | hsa-miR-4671-3p | 1 | __...... | 6 | 75 |
| MIMAT0019423 | pma-miR-30a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019046 | hsa-miR-4509 | 6 | _......_ | 1 | 75 |
| MIMAT0018438 | nlo-miR-927 | 1 | ......__ | 6 | 75 |
| MIMAT0018394 | ngi-miR-927 | 1 | ......__ | 6 | 75 |
| MIMAT0018849 | tca-miR-3878-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018576 | ame-miR-927b | 1 | ......__ | 6 | 75 |
| MIMAT0017983 | hsa-miR-3606-5p | 1 | __...... | 6 | 75 |
| MIMAT0015700 | nvi-miR-927 | 1 | ......__ | 6 | 75 |
| MIMAT0014797 | api-miR-3054 | 1 | __...... | 6 | 75 |
| MIMAT0013821 | osa-miR2871b | 3 | ......__ | 8 | 75 |
| MIMAT0013820 | osa-miR2871a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009760 | nve-miR-2025-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007407 | gga-miR-1552-5p | 1 | __...... | 6 | 75 |
| MIMAT0007117 | oan-miR-1380-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017298 | rno-miR-190b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0004438 | ame-miR-927a | 1 | ......__ | 6 | 75 |
| MIMAT0004271 | ath-miR849 | 8 | _......_ | 3 | 75 |
| MIMAT0026654 | mdo-miR-32-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026578 | mml-miR-32-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026508 | gga-miR-32-3p | 3 | _......_ | 8 | 75 |
