| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttttatt | 7 | ||
| MIMAT0030907 | stu-miR8011a-3p | 7 | ....... | 1 | 100 |
| MIMAT0030406 | ptc-miR7834 | 8 | ....... | 2 | 100 |
| MIMAT0021073 | gma-miR4372b | 8 | ....... | 2 | 100 |
| MIMAT0020151 | dme-miR-4943-5p | 1 | ....... | 7 | 100 |
| MIMAT0018844 | tca-miR-3876-5p | 2 | ....... | 8 | 100 |
| MIMAT0035800 | tae-miR7757-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035281 | gsa-miR-2001-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034094 | gra-miR8707 | 6 | ......_ | 1 | 85 |
| MIMAT0033797 | pxy-miR-8539-3p | 3 | _...... | 8 | 85 |
| MIMAT0033028 | ppc-miR-8364k-5p | 3 | _...... | 8 | 85 |
| MIMAT0031764 | hbv-miR-B3RC-5p | 7 | _...... | 2 | 85 |
| MIMAT0030779 | prd-miR-7952-3p | 8 | _...... | 3 | 85 |
| MIMAT0030732 | prd-miR-7937-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028847 | mdo-miR-7386j-3p | 6 | _...... | 1 | 85 |
| MIMAT0025398 | tgu-miR-1460 | 3 | _...... | 8 | 85 |
| MIMAT0023912 | cgr-miR-325-3p | 1 | _...... | 6 | 85 |
| MIMAT0022344 | cin-miR-5608-3p | 1 | ......_ | 6 | 85 |
| MIMAT0022343 | cin-miR-5608-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022300 | hsa-miR-5590-3p | 6 | _...... | 1 | 85 |
| MIMAT0022018 | aca-miR-5405-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020168 | dme-miR-4953-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016791 | cin-miR-4179a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015559 | bmo-miR-3372-5p | 1 | _...... | 6 | 85 |
| MIMAT0014062 | osa-miR2931 | 2 | _...... | 7 | 85 |
| MIMAT0012615 | bmo-miR-2737 | 1 | ......_ | 6 | 85 |
| MIMAT0013505 | mtr-miR2677 | 1 | _...... | 6 | 85 |
| MIMAT0013400 | mtr-miR2634 | 1 | _...... | 6 | 85 |
| MIMAT0012499 | dsi-miR-1013 | 6 | ......_ | 1 | 85 |
| MIMAT0011414 | sme-miR-754c-1-3p | 1 | ......_ | 6 | 85 |
| MIMAT0011415 | sme-miR-754b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009801 | nve-miR-2039-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032058 | dvi-miR-7-3p | 7 | _...... | 2 | 85 |
| MIMAT0026811 | mml-miR-95-5p | 8 | _...... | 3 | 85 |
| MIMAT0007396 | gma-miR1533 | 8 | _...... | 3 | 85 |
| MIMAT0007383 | gma-miR1522 | 1 | _...... | 6 | 85 |
| MIMAT0007338 | gga-miR-1460 | 3 | _...... | 8 | 85 |
| MIMAT0005026 | dme-miR-1013-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003771 | dre-miR-740 | 6 | ......_ | 1 | 85 |
| MIMAT0004640 | mmu-miR-325-3p | 1 | _...... | 6 | 85 |
| MIMAT0004639 | rno-miR-325-3p | 1 | _...... | 6 | 85 |
| MIMAT0020790 | dme-miR-7-3p | 7 | _...... | 2 | 85 |
| MIMAT0026473 | hsa-miR-95-5p | 8 | _...... | 3 | 85 |
