| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttttccc | 7 | ||
| MIMAT0029360 | lja-miR7535 | 7 | ....... | 1 | 100 |
| MIMAT0028465 | mdo-miR-7249-3p | 8 | ....... | 2 | 100 |
| MIMAT0025651 | gga-miR-6572-5p | 1 | ....... | 7 | 100 |
| MIMAT0027337 | ptc-miR6468-5p | 2 | ....... | 8 | 100 |
| MIMAT0024878 | osa-miR6255 | 8 | ....... | 2 | 100 |
| MIMAT0024597 | hsa-miR-6124 | 7 | ....... | 1 | 100 |
| MIMAT0020755 | bdi-miR5198 | 8 | ....... | 2 | 100 |
| MIMAT0019745 | hsa-miR-4668-5p | 8 | ....... | 2 | 100 |
| MIMAT0018473 | csi-miR472 | 1 | ....... | 7 | 100 |
| MIMAT0016774 | cin-miR-4166-5p | 8 | ....... | 2 | 100 |
| MIMAT0011914 | bta-miR-2370-5p | 8 | ....... | 2 | 100 |
| MIMAT0012543 | mdv2-miR-M24-5p | 2 | ....... | 8 | 100 |
| MIMAT0002061 | ptc-miR472b | 1 | ....... | 7 | 100 |
| MIMAT0002060 | ptc-miR472a | 1 | ....... | 7 | 100 |
| MIMAT0036597 | tch-miR-9771l | 6 | _...... | 1 | 85 |
| MIMAT0036469 | tch-miR-9771a | 6 | ......_ | 1 | 85 |
| MIMAT0035664 | bra-miR9555a-3p | 1 | _...... | 6 | 85 |
| MIMAT0035472 | sly-miR9477-3p | 8 | _...... | 3 | 85 |
| MIMAT0035072 | efu-miR-9330 | 3 | _...... | 8 | 85 |
| MIMAT0034448 | eca-miR-8920 | 1 | _...... | 6 | 85 |
| MIMAT0034078 | gra-miR8697 | 7 | _...... | 2 | 85 |
| MIMAT0033065 | ppc-miR-8281-5p | 8 | _...... | 3 | 85 |
| MIMAT0032793 | cel-miR-8190-5p | 7 | _...... | 2 | 85 |
| MIMAT0030133 | bdi-miR7708a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029789 | tgu-miR-7644-3p | 1 | ......_ | 6 | 85 |
| MIMAT0029372 | lja-miR7545 | 8 | _...... | 3 | 85 |
| MIMAT0029087 | gga-miR-7466-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028390 | mmu-miR-7211-5p | 3 | _...... | 8 | 85 |
| MIMAT0028252 | mml-miR-7164-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028163 | ssc-miR-7144-5p | 3 | _...... | 8 | 85 |
| MIMAT0028010 | mmu-miR-7053-5p | 8 | _...... | 3 | 85 |
| MIMAT0027923 | mmu-miR-7009-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027818 | mmu-miR-6959-5p | 7 | _...... | 2 | 85 |
| MIMAT0027706 | mmu-miR-6903-5p | 8 | _...... | 3 | 85 |
| MIMAT0027379 | hsa-miR-6739-5p | 7 | _...... | 2 | 85 |
| MIMAT0027367 | hsa-miR-6733-5p | 7 | _...... | 2 | 85 |
| MIMAT0025832 | gga-miR-6562-5p | 8 | _...... | 3 | 85 |
| MIMAT0025247 | ptc-miR6444 | 8 | ......_ | 3 | 85 |
| MIMAT0023570 | tca-miR-6014-3p | 3 | _...... | 8 | 85 |
| MIMAT0023273 | osa-miR812u | 8 | ......_ | 3 | 85 |
| MIMAT0023272 | osa-miR812t | 8 | ......_ | 3 | 85 |
| MIMAT0022516 | ssl-miR395 | 6 | _...... | 1 | 85 |
| MIMAT0022283 | hsa-miR-5584-5p | 8 | _...... | 3 | 85 |
| MIMAT0022219 | mtr-miR5558-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022218 | mtr-miR2592bn-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022214 | mtr-miR2592bm-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022031 | aca-miR-5412-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022016 | aca-miR-5403 | 8 | ......_ | 3 | 85 |
| MIMAT0027093 | bdi-miR395j-5p | 2 | _...... | 7 | 85 |
| MIMAT0021034 | hsa-miR-5006-3p | 1 | _...... | 6 | 85 |
| MIMAT0020183 | dme-miR-4962-5p | 1 | _...... | 6 | 85 |
| MIMAT0019895 | hsa-miR-4755-5p | 1 | _...... | 6 | 85 |
| MIMAT0019680 | osa-miR812n-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019233 | hsa-miR-4446-5p | 2 | _...... | 7 | 85 |
| MIMAT0018609 | ame-miR-3740 | 6 | ......_ | 1 | 85 |
| MIMAT0018596 | ame-miR-3729 | 3 | ......_ | 8 | 85 |
| MIMAT0018557 | ame-miR-965-5p | 7 | _...... | 2 | 85 |
| MIMAT0018036 | vvi-miR3632-3p | 1 | _...... | 6 | 85 |
| MIMAT0017942 | ath-miR4221 | 1 | ......_ | 6 | 85 |
| MIMAT0016501 | cin-miR-4009a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017837 | rno-miR-3564 | 7 | _...... | 2 | 85 |
| MIMAT0015026 | hsa-miR-3153 | 7 | _...... | 2 | 85 |
| MIMAT0014905 | mmu-miR-3092-5p | 8 | _...... | 3 | 85 |
| MIMAT0012930 | eca-miR-684 | 3 | ......_ | 8 | 85 |
| MIMAT0013369 | mtr-miR2629g | 3 | ......_ | 8 | 85 |
| MIMAT0013368 | mtr-miR2629f | 3 | ......_ | 8 | 85 |
| MIMAT0013367 | mtr-miR2629c | 3 | ......_ | 8 | 85 |
| MIMAT0013366 | mtr-miR2629b | 3 | ......_ | 8 | 85 |
| MIMAT0013365 | mtr-miR2629e | 3 | ......_ | 8 | 85 |
| MIMAT0013364 | mtr-miR2629d | 3 | ......_ | 8 | 85 |
| MIMAT0013363 | mtr-miR2629a | 3 | ......_ | 8 | 85 |
| MIMAT0010071 | osa-miR2103 | 1 | _...... | 6 | 85 |
| MIMAT0009424 | mmu-miR-1953 | 7 | _...... | 2 | 85 |
| MIMAT0005982 | mdv1-miR-M11-5p | 1 | ......_ | 6 | 85 |
| MIMAT0007104 | oan-miR-1422o-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006890 | oan-miR-1422g-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006882 | oan-miR-1422e-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020890 | dme-miR-991-5p | 1 | _...... | 6 | 85 |
| MIMAT0003462 | mmu-miR-684 | 3 | ......_ | 8 | 85 |
