| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttttcct | 7 | ||
| MIMAT0034066 | gra-miR7504d | 7 | ....... | 1 | 100 |
| MIMAT0030297 | bdi-miR7773-3p | 2 | ....... | 8 | 100 |
| MIMAT0029789 | tgu-miR-7644-3p | 1 | ....... | 7 | 100 |
| MIMAT0029087 | gga-miR-7466-3p | 1 | ....... | 7 | 100 |
| MIMAT0028717 | mdo-miR-7352-3p | 2 | ....... | 8 | 100 |
| MIMAT0028252 | mml-miR-7164-5p | 8 | ....... | 2 | 100 |
| MIMAT0025247 | ptc-miR6444 | 8 | ....... | 2 | 100 |
| MIMAT0025087 | mmu-miR-6344 | 2 | ....... | 8 | 100 |
| MIMAT0017942 | ath-miR4221 | 1 | ....... | 7 | 100 |
| MIMAT0017590 | aly-miR472-3p | 2 | ....... | 8 | 100 |
| MIMAT0012718 | hvt-miR-H7-5p | 2 | ....... | 8 | 100 |
| MIMAT0005982 | mdv1-miR-M11-5p | 1 | ....... | 7 | 100 |
| MIMAT0007100 | oan-miR-1422m-3p | 7 | ....... | 1 | 100 |
| MIMAT0004314 | ath-miR865-3p | 2 | ....... | 8 | 100 |
| MIMAT0003931 | ath-miR472-3p | 2 | ....... | 8 | 100 |
| MIMAT0036578 | tch-miR-9771k | 6 | _...... | 1 | 85 |
| MIMAT0036469 | tch-miR-9771a | 6 | ......_ | 1 | 85 |
| MIMAT0035606 | dvi-miR-994-5p | 8 | _...... | 3 | 85 |
| MIMAT0035460 | sly-miR482d-3p | 1 | _...... | 6 | 85 |
| MIMAT0034329 | cfa-miR-8836 | 6 | _...... | 1 | 85 |
| MIMAT0034224 | gra-miR482d | 1 | _...... | 6 | 85 |
| MIMAT0033303 | str-miR-8365-3p | 8 | _...... | 3 | 85 |
| MIMAT0031533 | ppe-miR8125 | 7 | _...... | 2 | 85 |
| MIMAT0031512 | ppe-miR482f | 3 | _...... | 8 | 85 |
| MIMAT0031219 | stu-miR319-5p | 6 | _...... | 1 | 85 |
| MIMAT0030951 | stu-miR8039 | 1 | _...... | 6 | 85 |
| MIMAT0030615 | prd-miR-7902-3p | 8 | _...... | 3 | 85 |
| MIMAT0030133 | bdi-miR7708a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030095 | bdi-miR395p-5p | 2 | _...... | 7 | 85 |
| MIMAT0029871 | mmu-miR-7678-3p | 1 | _...... | 6 | 85 |
| MIMAT0029363 | lja-miR7537 | 7 | _...... | 2 | 85 |
| MIMAT0029116 | gga-miR-7481-5p | 2 | _...... | 7 | 85 |
| MIMAT0028478 | mdo-miR-7256-5p | 3 | _...... | 8 | 85 |
| MIMAT0028465 | mdo-miR-7249-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028246 | mml-miR-3059-5p | 1 | _...... | 6 | 85 |
| MIMAT0028214 | hsa-miR-7152-5p | 1 | _...... | 6 | 85 |
| MIMAT0026379 | bma-miR-5879b | 8 | _...... | 3 | 85 |
| MIMAT0026023 | mdm-miR482c | 3 | _...... | 8 | 85 |
| MIMAT0026022 | mdm-miR482b | 3 | _...... | 8 | 85 |
| MIMAT0027923 | mmu-miR-7009-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025729 | gga-miR-6633-5p | 8 | _...... | 3 | 85 |
| MIMAT0025651 | gga-miR-6572-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025333 | pde-miR482a | 3 | _...... | 8 | 85 |
| MIMAT0025130 | mmu-miR-6384 | 3 | _...... | 8 | 85 |
| MIMAT0024878 | osa-miR6255 | 8 | ......_ | 3 | 85 |
| MIMAT0024876 | osa-miR6253 | 7 | _...... | 2 | 85 |
| MIMAT0024815 | hvu-miR6190 | 8 | _...... | 3 | 85 |
| MIMAT0027240 | pgi-miR2118 | 1 | _...... | 6 | 85 |
| MIMAT0023990 | cgr-miR-632 | 2 | _...... | 7 | 85 |
| MIMAT0023596 | stu-miR482c | 1 | _...... | 6 | 85 |
| MIMAT0023273 | osa-miR812u | 8 | ......_ | 3 | 85 |
| MIMAT0023272 | osa-miR812t | 8 | ......_ | 3 | 85 |
| MIMAT0022359 | mmu-miR-5616-5p | 1 | _...... | 6 | 85 |
| MIMAT0022219 | mtr-miR5558-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022218 | mtr-miR2592bn-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022214 | mtr-miR2592bm-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022031 | aca-miR-5412-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022016 | aca-miR-5403 | 8 | ......_ | 3 | 85 |
| MIMAT0021848 | aca-miR-202-5p | 1 | _...... | 6 | 85 |
| MIMAT0032124 | sly-miR482e-3p | 3 | _...... | 8 | 85 |
| MIMAT0021351 | mtr-miR5289b | 8 | _...... | 3 | 85 |
| MIMAT0021350 | mtr-miR5289a | 8 | _...... | 3 | 85 |
| MIMAT0020755 | bdi-miR5198 | 8 | ......_ | 3 | 85 |
| MIMAT0027091 | bdi-miR395g-5p | 2 | _...... | 7 | 85 |
| MIMAT0021085 | hsa-miR-5093 | 6 | _...... | 1 | 85 |
| MIMAT0019745 | hsa-miR-4668-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019680 | osa-miR812n-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019410 | pma-miR-26a-2-3p | 3 | _...... | 8 | 85 |
| MIMAT0019031 | hsa-miR-4496 | 7 | _...... | 2 | 85 |
| MIMAT0018473 | csi-miR472 | 1 | ......_ | 6 | 85 |
| MIMAT0018609 | ame-miR-3740 | 6 | ......_ | 1 | 85 |
| MIMAT0018596 | ame-miR-3729 | 3 | ......_ | 8 | 85 |
| MIMAT0018158 | pab-miR482c | 3 | _...... | 8 | 85 |
| MIMAT0018113 | hsa-miR-3685 | 1 | _...... | 6 | 85 |
| MIMAT0016890 | hsa-miR-4261 | 6 | _...... | 1 | 85 |
| MIMAT0016774 | cin-miR-4166-5p | 8 | ......_ | 3 | 85 |
| MIMAT0016501 | cin-miR-4009a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016485 | cin-miR-4006g-3p | 1 | _...... | 6 | 85 |
| MIMAT0017888 | rno-miR-3589 | 7 | _...... | 2 | 85 |
| MIMAT0017731 | aly-miR3448-5p | 8 | _...... | 3 | 85 |
| MIMAT0019200 | hsa-miR-3124-3p | 3 | _...... | 8 | 85 |
| MIMAT0014485 | tgu-miR-2975 | 8 | _...... | 3 | 85 |
| MIMAT0014454 | tgu-miR-2956 | 7 | _...... | 2 | 85 |
| MIMAT0014339 | ghr-miR482a | 3 | _...... | 8 | 85 |
| MIMAT0016952 | rlcv-miR-rL1-28-3p | 7 | _...... | 2 | 85 |
| MIMAT0015343 | zma-miR395k-5p | 2 | _...... | 7 | 85 |
| MIMAT0012930 | eca-miR-684 | 3 | ......_ | 8 | 85 |
| MIMAT0026954 | mml-miR-670-3p | 1 | _...... | 6 | 85 |
| MIMAT0013584 | cte-miR-2715 | 1 | _...... | 6 | 85 |
| MIMAT0013369 | mtr-miR2629g | 3 | ......_ | 8 | 85 |
| MIMAT0013368 | mtr-miR2629f | 3 | ......_ | 8 | 85 |
| MIMAT0013367 | mtr-miR2629c | 3 | ......_ | 8 | 85 |
| MIMAT0013366 | mtr-miR2629b | 3 | ......_ | 8 | 85 |
| MIMAT0013365 | mtr-miR2629e | 3 | ......_ | 8 | 85 |
| MIMAT0013364 | mtr-miR2629d | 3 | ......_ | 8 | 85 |
| MIMAT0013363 | mtr-miR2629a | 3 | ......_ | 8 | 85 |
| MIMAT0012239 | dps-miR-994-5p | 8 | _...... | 3 | 85 |
| MIMAT0011914 | bta-miR-2370-5p | 8 | ......_ | 3 | 85 |
| MIMAT0009980 | osa-miR2055 | 1 | _...... | 6 | 85 |
| MIMAT0009431 | mmu-miR-1958 | 7 | _...... | 2 | 85 |
| MIMAT0032071 | dvi-miR-316-3p | 8 | _...... | 3 | 85 |
| MIMAT0007792 | osa-miR1859 | 1 | _...... | 6 | 85 |
| MIMAT0006686 | cfa-miR-1841 | 8 | _...... | 3 | 85 |
| MIMAT0006576 | vvi-miR482 | 3 | _...... | 8 | 85 |
| MIMAT0006374 | mml-miR-516a-3p | 3 | _...... | 8 | 85 |
| MIMAT0007576 | gga-miR-1687-5p | 8 | _...... | 3 | 85 |
| MIMAT0007478 | gga-miR-1612 | 8 | _...... | 3 | 85 |
| MIMAT0007431 | gga-miR-1571 | 3 | _...... | 8 | 85 |
| MIMAT0007104 | oan-miR-1422o-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007055 | oan-miR-1374 | 3 | _...... | 8 | 85 |
| MIMAT0006890 | oan-miR-1422g-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006882 | oan-miR-1422e-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003620 | xtr-miR-202-5p | 1 | _...... | 6 | 85 |
| MIMAT0003911 | ppt-miR1219d | 1 | _...... | 6 | 85 |
| MIMAT0003462 | mmu-miR-684 | 3 | ......_ | 8 | 85 |
| MIMAT0014811 | mmu-miR-3059-5p | 1 | _...... | 6 | 85 |
| MIMAT0017242 | mmu-miR-670-3p | 1 | _...... | 6 | 85 |
| MIMAT0026640 | hsa-miR-670-3p | 1 | _...... | 6 | 85 |
| MIMAT0003354 | gga-miR-202-5p | 1 | _...... | 6 | 85 |
| MIMAT0026624 | hsa-miR-651-3p | 8 | _...... | 3 | 85 |
| MIMAT0002061 | ptc-miR472b | 1 | ......_ | 6 | 85 |
| MIMAT0002060 | ptc-miR472a | 1 | ......_ | 6 | 85 |
| MIMAT0017142 | rno-miR-185-3p | 1 | _...... | 6 | 85 |
| MIMAT0020842 | dme-miR-316-3p | 8 | _...... | 3 | 85 |
