| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttttctcc | 8 | ||
| MIMAT0012865 | hvt-miR-H13 | 1 | ........ | 8 | 100 |
| MIMAT0005979 | mdv1-miR-M9-5p | 1 | ........ | 8 | 100 |
| MIMAT0034227 | gra-miR7504m | 1 | _....... | 7 | 87 |
| MIMAT0034226 | gra-miR7504l | 1 | _....... | 7 | 87 |
| MIMAT0034225 | gra-miR7504k | 1 | _....... | 7 | 87 |
| MIMAT0034068 | gra-miR7504f | 8 | _....... | 2 | 87 |
| MIMAT0034067 | gra-miR7504e | 8 | _....... | 2 | 87 |
| MIMAT0033872 | atr-miR8586 | 1 | ......._ | 7 | 87 |
| MIMAT0025816 | gga-miR-6706-5p | 8 | _....... | 2 | 87 |
| MIMAT0023111 | tur-miR-5738-3p | 1 | ......._ | 7 | 87 |
| MIMAT0021603 | gma-miR5369 | 8 | ......._ | 2 | 87 |
| MIMAT0020155 | dme-miR-4945-5p | 1 | ......._ | 7 | 87 |
| MIMAT0020467 | bfl-miR-4882b | 7 | _....... | 1 | 87 |
| MIMAT0018308 | gma-miR4393a | 8 | ......._ | 2 | 87 |
| MIMAT0016558 | cin-miR-4034-3p | 2 | ......._ | 8 | 87 |
| MIMAT0015989 | ppy-miR-539 | 7 | _....... | 1 | 87 |
| MIMAT0013167 | eca-miR-539 | 7 | _....... | 1 | 87 |
| MIMAT0009909 | cfa-miR-539 | 7 | _....... | 1 | 87 |
| MIMAT0009342 | bta-miR-539 | 7 | _....... | 1 | 87 |
| MIMAT0008214 | ptr-miR-539 | 7 | _....... | 1 | 87 |
| MIMAT0006405 | mml-miR-539 | 7 | _....... | 1 | 87 |
| MIMAT0004474 | mdv2-miR-M28-5p | 1 | ......._ | 7 | 87 |
| MIMAT0003176 | rno-miR-539-5p | 7 | _....... | 1 | 87 |
| MIMAT0003169 | mmu-miR-539-5p | 7 | _....... | 1 | 87 |
| MIMAT0003163 | hsa-miR-539-5p | 7 | _....... | 1 | 87 |
| MIMAT0035118 | efu-miR-9348 | 1 | .g...... | 8 | 87 |
| MIMAT0034898 | efu-miR-9268 | 1 | .c...... | 8 | 87 |
| MIMAT0033899 | atr-miR8608 | 1 | ......a. | 8 | 87 |
| MIMAT0018539 | ame-miR-3765 | 8 | ......t. | 1 | 87 |
| MIMAT0017622 | aly-miR838-3p | 1 | ......t. | 8 | 87 |
| MIMAT0004260 | ath-miR838 | 1 | ......t. | 8 | 87 |
| MIMAT0004247 | ath-miR830-5p | 1 | .c...... | 8 | 87 |
| MIMAT0037242 | ata-miR164c-5p | 7 | __...... | 2 | 75 |
| MIMAT0037218 | ata-miR164b-5p | 7 | __...... | 2 | 75 |
| MIMAT0037212 | ata-miR164a-5p | 7 | __...... | 2 | 75 |
| MIMAT0037210 | ata-miR395c-5p | 2 | __...... | 7 | 75 |
| MIMAT0037004 | ssc-miR-9787-3p | 7 | _......_ | 2 | 75 |
| MIMAT0036614 | tch-miR-9771o | 6 | ......__ | 1 | 75 |
| MIMAT0036557 | tch-miR-9771j | 6 | ......__ | 1 | 75 |
| MIMAT0036407 | ggo-miR-519e-5p | 1 | __...... | 6 | 75 |
| MIMAT0036405 | ggo-miR-515-5p | 1 | __...... | 6 | 75 |
| MIMAT0035870 | bra-miR164e-5p | 7 | __...... | 2 | 75 |
| MIMAT0035868 | bra-miR164c-5p | 7 | __...... | 2 | 75 |
| MIMAT0035866 | bra-miR164d-5p | 7 | __...... | 2 | 75 |
| MIMAT0035864 | bra-miR164b-5p | 7 | __...... | 2 | 75 |
| MIMAT0035426 | nve-miR-9467 | 3 | ......__ | 8 | 75 |
| MIMAT0035407 | nve-miR-9446 | 3 | ......__ | 8 | 75 |
| MIMAT0035362 | xtr-miR-428b | 6 | _......_ | 1 | 75 |
| MIMAT0034918 | efu-miR-9280 | 1 | __...... | 6 | 75 |
| MIMAT0034629 | eca-miR-9084 | 3 | ......__ | 8 | 75 |
| MIMAT0034559 | eca-miR-9018 | 2 | ......__ | 7 | 75 |
| MIMAT0034241 | gra-miR8787 | 1 | ......__ | 6 | 75 |
| MIMAT0034044 | gra-miR8672 | 8 | _......_ | 3 | 75 |
| MIMAT0034027 | gra-miR7504c | 8 | _......_ | 3 | 75 |
| MIMAT0033975 | sly-miR164b-5p | 7 | __...... | 2 | 75 |
| MIMAT0033973 | sly-miR164a-5p | 7 | __...... | 2 | 75 |
| MIMAT0033914 | atr-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0033913 | atr-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0033719 | pxy-miR-965 | 7 | __...... | 2 | 75 |
| MIMAT0033550 | sma-miR-8423-5p | 1 | ......__ | 6 | 75 |
| MIMAT0033517 | sma-miR-8406-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031795 | cpa-miR164e | 7 | __...... | 2 | 75 |
| MIMAT0031794 | cpa-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0031793 | cpa-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0031792 | cpa-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0031791 | cpa-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0031444 | ppe-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0031443 | ppe-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0031442 | ppe-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0031441 | ppe-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0031377 | osa-miR5539b | 7 | ......__ | 2 | 75 |
| MIMAT0031235 | stu-miR164-5p | 7 | __...... | 2 | 75 |
| MIMAT0030383 | ptc-miR7824 | 8 | _......_ | 3 | 75 |
| MIMAT0030367 | hhi-miR-737 | 6 | ......__ | 1 | 75 |
| MIMAT0030153 | bdi-miR7715-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030150 | bdi-miR7714-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029191 | mes-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0029190 | mes-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0029189 | mes-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0029188 | mes-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0029155 | ghr-miR7508 | 8 | ......__ | 3 | 75 |
| MIMAT0029033 | gga-miR-7439-3p | 1 | __...... | 6 | 75 |
| MIMAT0028755 | mdo-miR-1544d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031034 | mdo-miR-1544e-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028747 | mdo-miR-1544c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028745 | mdo-miR-1544b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028503 | mdo-miR-30c-1-3p | 8 | __...... | 3 | 75 |
| MIMAT0028460 | mdo-miR-7247-5p | 7 | __...... | 2 | 75 |
| MIMAT0028396 | mmu-miR-7214-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028285 | mml-miR-7173-3p | 7 | __...... | 2 | 75 |
| MIMAT0026435 | sbi-miR6229-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026090 | cme-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0026086 | cme-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0025912 | mdm-miR164f | 7 | __...... | 2 | 75 |
| MIMAT0025911 | mdm-miR164e | 7 | __...... | 2 | 75 |
| MIMAT0025910 | mdm-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0025909 | mdm-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0025908 | mdm-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0025907 | mdm-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0027884 | mmu-miR-6991-5p | 7 | __...... | 2 | 75 |
| MIMAT0027693 | mmu-miR-6896-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027656 | hsa-miR-6878-5p | 8 | __...... | 3 | 75 |
| MIMAT0027567 | hsa-miR-6833-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027349 | cln-miR164 | 7 | __...... | 2 | 75 |
| MIMAT0025715 | gga-miR-6619-5p | 7 | __...... | 2 | 75 |
| MIMAT0025653 | gga-miR-6573-5p | 7 | __...... | 2 | 75 |
| MIMAT0025625 | gga-miR-6559-5p | 8 | __...... | 3 | 75 |
| MIMAT0025502 | hci-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0024895 | gma-miR164k | 7 | __...... | 2 | 75 |
| MIMAT0024894 | gma-miR164j | 7 | __...... | 2 | 75 |
| MIMAT0024893 | gma-miR164i | 7 | __...... | 2 | 75 |
| MIMAT0024892 | gma-miR164h | 7 | __...... | 2 | 75 |
| MIMAT0024891 | gma-miR164g | 7 | __...... | 2 | 75 |
| MIMAT0024890 | gma-miR164f | 7 | __...... | 2 | 75 |
| MIMAT0024889 | gma-miR164e | 7 | __...... | 2 | 75 |
| MIMAT0027275 | ppe-miR6259 | 7 | ......__ | 2 | 75 |
| MIMAT0024832 | hvu-miR6204 | 7 | __...... | 2 | 75 |
| MIMAT0024777 | nta-miR6162 | 6 | ......__ | 1 | 75 |
| MIMAT0024648 | nta-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0024647 | nta-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0024646 | nta-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0027227 | lus-miR164e | 7 | __...... | 2 | 75 |
| MIMAT0027183 | lus-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0027142 | lus-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0027138 | lus-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0027129 | lus-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0024515 | cca-miR164 | 7 | __...... | 2 | 75 |
| MIMAT0024507 | mse-miR-6099 | 7 | _......_ | 2 | 75 |
| MIMAT0024353 | mml-miR-519e | 1 | __...... | 6 | 75 |
| MIMAT0023624 | bna-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0023623 | bna-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0023622 | bna-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0023554 | ame-miR-6006-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022757 | vun-miR164 | 7 | __...... | 2 | 75 |
| MIMAT0022508 | ssl-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0022507 | ssl-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0022496 | hsa-miR-5703 | 7 | __...... | 2 | 75 |
| MIMAT0022468 | hsa-miR-5680 | 6 | _......_ | 1 | 75 |
| MIMAT0022334 | cin-miR-5604-3p | 1 | _......_ | 6 | 75 |
| MIMAT0022175 | osa-miR5539a | 7 | ......__ | 2 | 75 |
| MIMAT0021558 | asu-miR-5350d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021552 | asu-miR-5350a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021233 | mtr-miR5239 | 8 | __...... | 3 | 75 |
| MIMAT0027089 | bdi-miR395e-5p | 2 | __...... | 7 | 75 |
| MIMAT0020741 | bdi-miR164f | 7 | __...... | 2 | 75 |
| MIMAT0020740 | bdi-miR164e | 7 | __...... | 2 | 75 |
| MIMAT0022749 | cme-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0020728 | bdi-miR164c-5p | 7 | __...... | 2 | 75 |
| MIMAT0020693 | bdi-miR164a-5p | 7 | __...... | 2 | 75 |
| MIMAT0020669 | bdi-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0020561 | osa-miR5075 | 1 | __...... | 6 | 75 |
| MIMAT0020977 | gma-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0020976 | gma-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0020975 | gma-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0020508 | dme-miR-4915-5p | 8 | _......_ | 3 | 75 |
| MIMAT0020468 | bfl-miR-4882c | 8 | _......_ | 3 | 75 |
| MIMAT0020466 | bfl-miR-4882a | 7 | _......_ | 2 | 75 |
| MIMAT0020382 | tcc-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0020381 | tcc-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0020380 | tcc-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0019820 | hsa-miR-4713-5p | 1 | __...... | 6 | 75 |
| MIMAT0019578 | pma-miR-4547-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019070 | hsa-miR-4531 | 8 | __...... | 3 | 75 |
| MIMAT0019053 | hsa-miR-4516 | 7 | __...... | 2 | 75 |
| MIMAT0018950 | hsa-miR-4434 | 7 | __...... | 2 | 75 |
| MIMAT0018376 | far-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0018370 | far-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0018678 | tca-miR-3825-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017945 | ath-miR3440b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016832 | cin-miR-4211-5p | 8 | ......__ | 3 | 75 |
| MIMAT0015943 | ppy-miR-515-5p | 1 | __...... | 6 | 75 |
| MIMAT0017779 | esi-miR3453-5p | 1 | __...... | 6 | 75 |
| MIMAT0017655 | aly-miR868-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017551 | aly-miR395d-5p | 2 | __...... | 7 | 75 |
| MIMAT0017453 | aly-miR164c-5p | 7 | __...... | 2 | 75 |
| MIMAT0017451 | aly-miR164b-5p | 7 | __...... | 2 | 75 |
| MIMAT0017449 | aly-miR164a-5p | 7 | __...... | 2 | 75 |
| MIMAT0014830 | mmu-miR-3062-5p | 6 | __...... | 1 | 75 |
| MIMAT0014331 | ghr-miR164 | 7 | __...... | 2 | 75 |
| MIMAT0014159 | rco-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0014158 | rco-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0014157 | rco-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0014156 | rco-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0014080 | ctr-miR164 | 7 | __...... | 2 | 75 |
| MIMAT0014069 | csi-miR164 | 7 | __...... | 2 | 75 |
| MIMAT0013985 | zma-miR164h-5p | 7 | __...... | 2 | 75 |
| MIMAT0013984 | zma-miR164g-5p | 7 | __...... | 2 | 75 |
| MIMAT0013983 | zma-miR164f-5p | 7 | __...... | 2 | 75 |
| MIMAT0013982 | zma-miR164e-5p | 7 | __...... | 2 | 75 |
| MIMAT0012721 | hvt-miR-H9-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013684 | bmo-miR-2787-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012375 | dps-miR-2556-3p | 3 | __...... | 8 | 75 |
| MIMAT0012081 | bta-miR-2486-5p | 6 | __...... | 1 | 75 |
| MIMAT0011947 | bta-miR-2394 | 1 | __...... | 6 | 75 |
| MIMAT0011326 | sbi-miR164e | 7 | __...... | 2 | 75 |
| MIMAT0011325 | sbi-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0010156 | bra-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0015295 | bmo-miR-965-5p | 8 | __...... | 3 | 75 |
| MIMAT0009935 | cfa-miR-207 | 3 | __...... | 8 | 75 |
| MIMAT0007793 | osa-miR1860-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015266 | cel-miR-1822-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031117 | mml-miR-30c-2-3p | 8 | __...... | 3 | 75 |
| MIMAT0007460 | gga-miR-1596-5p | 2 | __...... | 7 | 75 |
| MIMAT0026768 | mdo-miR-1544a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007354 | gma-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0007209 | oan-miR-1402 | 8 | __...... | 3 | 75 |
| MIMAT0006896 | oan-miR-1422k-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006892 | oan-miR-1422c-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006886 | oan-miR-1422b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006880 | oan-miR-1422a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0005661 | vvi-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0005660 | vvi-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0005659 | vvi-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0005658 | vvi-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0005633 | bna-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0005346 | tae-miR164 | 7 | __...... | 2 | 75 |
| MIMAT0005113 | ppt-miR1026b | 7 | _......_ | 2 | 75 |
| MIMAT0005112 | ppt-miR1026a | 7 | _......_ | 2 | 75 |
| MIMAT0004458 | mdv2-miR-M18-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011103 | mtr-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0011102 | mtr-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0011098 | mtr-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0011059 | mtr-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0004256 | ath-miR835-3p | 7 | __...... | 2 | 75 |
| MIMAT0003496 | mmu-miR-706 | 7 | _......_ | 2 | 75 |
| MIMAT0003298 | hsa-miR-629-3p | 2 | __...... | 7 | 75 |
| MIMAT0026623 | hsa-miR-627-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003115 | rno-miR-207 | 2 | __...... | 7 | 75 |
| MIMAT0002828 | hsa-miR-519e-5p | 1 | __...... | 6 | 75 |
| MIMAT0002826 | hsa-miR-515-5p | 1 | __...... | 6 | 75 |
| MIMAT0001923 | ptc-miR164f | 7 | __...... | 2 | 75 |
| MIMAT0001922 | ptc-miR164e | 7 | __...... | 2 | 75 |
| MIMAT0001921 | ptc-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0001920 | ptc-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0001919 | ptc-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0001918 | ptc-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0001754 | sbi-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0015166 | zma-miR395a-5p | 2 | __...... | 7 | 75 |
| MIMAT0001445 | sbi-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0001406 | sbi-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0001367 | zma-miR164c-5p | 7 | __...... | 2 | 75 |
| MIMAT0001366 | zma-miR164b-5p | 7 | __...... | 2 | 75 |
| MIMAT0001365 | zma-miR164d-5p | 7 | __...... | 2 | 75 |
| MIMAT0001364 | zma-miR164a-5p | 7 | __...... | 2 | 75 |
| MIMAT0026515 | gga-miR-30c-2-3p | 8 | __...... | 3 | 75 |
| MIMAT0001089 | osa-miR164f | 7 | __...... | 2 | 75 |
| MIMAT0001035 | osa-miR164e | 7 | __...... | 2 | 75 |
| MIMAT0001034 | osa-miR164d | 7 | __...... | 2 | 75 |
| MIMAT0001033 | osa-miR164c | 7 | __...... | 2 | 75 |
| MIMAT0001017 | ath-miR164c-5p | 7 | __...... | 2 | 75 |
| MIMAT0001000 | ebv-miR-BART2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000634 | osa-miR164b | 7 | __...... | 2 | 75 |
| MIMAT0000633 | osa-miR164a | 7 | __...... | 2 | 75 |
| MIMAT0015119 | cel-miR-247-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000240 | mmu-miR-207 | 3 | __...... | 8 | 75 |
| MIMAT0000186 | ath-miR164b-5p | 7 | __...... | 2 | 75 |
| MIMAT0000185 | ath-miR164a | 7 | __...... | 2 | 75 |
