| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttttgttt | 8 | ||
| MIMAT0016953 | rlcv-miR-rL1-29-3p | 1 | ........ | 8 | 100 |
| MIMAT0003718 | ebv-miR-BART19-3p | 1 | ........ | 8 | 100 |
| MIMAT0037111 | ata-miR2275a-3p | 1 | _....... | 7 | 87 |
| MIMAT0036983 | tae-miR9773 | 1 | _....... | 7 | 87 |
| MIMAT0036968 | gra-miR827b | 1 | _....... | 7 | 87 |
| MIMAT0036256 | chi-miR-495-3p | 7 | _....... | 1 | 87 |
| MIMAT0036000 | chi-miR-1814 | 2 | ......._ | 8 | 87 |
| MIMAT0035464 | sly-miR9474-3p | 1 | ......._ | 7 | 87 |
| MIMAT0035364 | bol-miR9409 | 1 | ......._ | 7 | 87 |
| MIMAT0035180 | efu-miR-375 | 1 | ......._ | 7 | 87 |
| MIMAT0035031 | efu-miR-495 | 7 | _....... | 1 | 87 |
| MIMAT0034381 | cfa-miR-8881 | 1 | _....... | 7 | 87 |
| MIMAT0030515 | prd-miR-7879-3p | 1 | ......._ | 7 | 87 |
| MIMAT0029948 | bta-miR-3613b | 8 | ......._ | 2 | 87 |
| MIMAT0029771 | cbn-miR-355 | 1 | _....... | 7 | 87 |
| MIMAT0024104 | ggo-miR-495 | 7 | _....... | 1 | 87 |
| MIMAT0023561 | tca-miR-6010-5p | 2 | _....... | 8 | 87 |
| MIMAT0021219 | mtr-miR5234 | 1 | ......._ | 7 | 87 |
| MIMAT0027075 | bdi-miR827-5p | 1 | ......._ | 7 | 87 |
| MIMAT0020608 | mmu-miR-5101 | 1 | _....... | 7 | 87 |
| MIMAT0019609 | pma-miR-4576 | 1 | _....... | 7 | 87 |
| MIMAT0019274 | oar-miR-495-3p | 7 | _....... | 1 | 87 |
| MIMAT0016632 | cin-miR-4072-5p | 1 | _....... | 7 | 87 |
| MIMAT0015916 | ppy-miR-495 | 7 | _....... | 1 | 87 |
| MIMAT0013165 | eca-miR-495 | 7 | _....... | 1 | 87 |
| MIMAT0011984 | bta-miR-1814c | 2 | ......._ | 8 | 87 |
| MIMAT0011854 | bta-miR-2325a | 2 | ......._ | 8 | 87 |
| MIMAT0011822 | bta-miR-2310 | 2 | ......._ | 8 | 87 |
| MIMAT0011774 | zma-miR2275d-3p | 1 | _....... | 7 | 87 |
| MIMAT0011768 | zma-miR2275a-3p | 1 | _....... | 7 | 87 |
| MIMAT0011535 | crm-miR-355 | 1 | _....... | 7 | 87 |
| MIMAT0009335 | bta-miR-495 | 7 | _....... | 1 | 87 |
| MIMAT0009303 | bta-miR-375 | 1 | ......._ | 7 | 87 |
| MIMAT0008169 | ptr-miR-495 | 7 | _....... | 1 | 87 |
| MIMAT0006721 | cfa-miR-495 | 7 | _....... | 1 | 87 |
| MIMAT0006357 | mml-miR-495-3p | 7 | _....... | 1 | 87 |
| MIMAT0005850 | mmu-miR-1192 | 7 | _....... | 1 | 87 |
| MIMAT0005320 | rno-miR-495 | 7 | _....... | 1 | 87 |
| MIMAT0004138 | mdo-miR-375 | 1 | ......._ | 7 | 87 |
| MIMAT0003456 | mmu-miR-495-3p | 7 | _....... | 1 | 87 |
| MIMAT0002817 | hsa-miR-495-3p | 7 | _....... | 1 | 87 |
| MIMAT0001319 | cbr-miR-355 | 1 | _....... | 7 | 87 |
| MIMAT0000697 | cel-miR-355-5p | 1 | _....... | 7 | 87 |
| MIMAT0035334 | gsa-miR-76b-5p | 1 | .c...... | 8 | 87 |
| MIMAT0033419 | str-miR-8381-3p | 1 | ......a. | 8 | 87 |
| MIMAT0033237 | ppc-miR-8345-3p | 1 | ......a. | 8 | 87 |
| MIMAT0030831 | prd-miR-7965-3p | 1 | ......a. | 8 | 87 |
| MIMAT0023380 | hco-miR-5897c | 1 | ......a. | 8 | 87 |
| MIMAT0023364 | hco-miR-5897b | 1 | ......a. | 8 | 87 |
| MIMAT0023341 | hco-miR-5897a | 1 | ......a. | 8 | 87 |
| MIMAT0023173 | gma-miR5761b | 1 | ......g. | 8 | 87 |
| MIMAT0023157 | gma-miR5761a | 1 | ......g. | 8 | 87 |
| MIMAT0021044 | hsa-miR-5010-3p | 1 | ......g. | 8 | 87 |
| MIMAT0016356 | gso-miR1510a | 1 | .g...... | 8 | 87 |
| MIMAT0016355 | gso-miR1510b | 1 | .g...... | 8 | 87 |
| MIMAT0017644 | aly-miR857-3p | 1 | ......a. | 8 | 87 |
| MIMAT0014054 | osa-miR2923 | 8 | ......c. | 1 | 87 |
| MIMAT0014051 | osa-miR2920 | 8 | .g...... | 1 | 87 |
| MIMAT0012306 | dps-miR-2528 | 1 | ......c. | 8 | 87 |
| MIMAT0011680 | ppc-miR-2256 | 1 | .g...... | 8 | 87 |
| MIMAT0010082 | gma-miR1510b-3p | 1 | .g...... | 8 | 87 |
| MIMAT0007699 | gga-miR-1787 | 1 | .g...... | 8 | 87 |
| MIMAT0004301 | ath-miR857 | 1 | ......a. | 8 | 87 |
| MIMAT0000767 | cbr-lsy-6 | 1 | ......a. | 8 | 87 |
| MIMAT0000749 | cel-lsy-6-3p | 1 | ......a. | 8 | 87 |
| MIMAT0037125 | ata-miR2275b-3p | 2 | __...... | 7 | 75 |
| MIMAT0036995 | tae-miR9781 | 1 | ......__ | 6 | 75 |
| MIMAT0036948 | oha-miR-7-3-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036946 | oha-miR-7-1-3p | 7 | _......_ | 2 | 75 |
| MIMAT0036918 | oha-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036289 | chi-miR-7-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036278 | chi-miR-545-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035858 | bra-miR403-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035693 | bra-miR9567-5p | 7 | __...... | 2 | 75 |
| MIMAT0035687 | bra-miR9564-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035569 | dvi-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035286 | gsa-miR-76a-5p | 2 | __...... | 7 | 75 |
| MIMAT0034742 | eca-miR-3613 | 6 | ......__ | 1 | 75 |
| MIMAT0034595 | eca-miR-9051 | 3 | ......__ | 8 | 75 |
| MIMAT0034336 | cfa-miR-8843 | 1 | __...... | 6 | 75 |
| MIMAT0033698 | pxy-miR-8490 | 1 | __...... | 6 | 75 |
| MIMAT0033509 | sma-miR-8404-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033012 | ppc-miR-8264-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032937 | ppc-miR-8240-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032696 | ssa-miR-7a-3-3p | 7 | _......_ | 2 | 75 |
| MIMAT0032626 | ssa-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031676 | bbe-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031386 | aly-miR403b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031272 | stu-miR827-5p | 1 | _......_ | 6 | 75 |
| MIMAT0030995 | hsa-miR-8068 | 3 | _......_ | 8 | 75 |
| MIMAT0031196 | stu-miR8014-5p | 2 | __...... | 7 | 75 |
| MIMAT0030258 | bdi-miR7757-5p.1 | 7 | ......__ | 2 | 75 |
| MIMAT0030206 | bdi-miR7735-5p | 1 | __...... | 6 | 75 |
| MIMAT0030172 | bdi-miR7723a-5p | 8 | __...... | 3 | 75 |
| MIMAT0030087 | bdi-miR166h-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032173 | pmi-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0029679 | cbn-miR-356 | 1 | _......_ | 6 | 75 |
| MIMAT0029508 | ipu-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0031143 | aja-miR-7 | 7 | _......_ | 2 | 75 |
| MIMAT0028436 | mmu-miR-7234-5p | 1 | __...... | 6 | 75 |
| MIMAT0028343 | mml-miR-7192-3p | 1 | __...... | 6 | 75 |
| MIMAT0028160 | ssc-miR-7142-3p | 1 | _......_ | 6 | 75 |
| MIMAT0026343 | bma-miR-5845 | 2 | ......__ | 7 | 75 |
| MIMAT0026295 | ccr-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0028107 | ddi-miR-7104 | 6 | __...... | 1 | 75 |
| MIMAT0025021 | meu-miR-6313 | 1 | _......_ | 6 | 75 |
| MIMAT0024189 | ggo-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0031159 | stu-miR6024-5p | 8 | __...... | 3 | 75 |
| MIMAT0023394 | hco-miR-5920 | 2 | ......__ | 7 | 75 |
| MIMAT0023301 | osa-miR5827 | 1 | _......_ | 6 | 75 |
| MIMAT0023134 | mtr-miR5752b | 3 | __...... | 8 | 75 |
| MIMAT0023133 | mtr-miR5752a | 3 | __...... | 8 | 75 |
| MIMAT0022793 | sha-miR-7 | 7 | _......_ | 2 | 75 |
| MIMAT0023070 | tur-miR-210-5p | 3 | __...... | 8 | 75 |
| MIMAT0023006 | bra-miR5711 | 3 | ......__ | 8 | 75 |
| MIMAT0022479 | hsa-miR-5688 | 7 | _......_ | 2 | 75 |
| MIMAT0022419 | ath-miR833b | 3 | _......_ | 8 | 75 |
| MIMAT0022416 | ath-miR5650 | 1 | __...... | 6 | 75 |
| MIMAT0022312 | cel-miR-356b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0022243 | sbi-miR5565e | 1 | __...... | 6 | 75 |
| MIMAT0022182 | cel-miR-5545-3p | 3 | ......__ | 8 | 75 |
| MIMAT0022158 | osa-miR2275d | 2 | __...... | 7 | 75 |
| MIMAT0022146 | osa-miR5513 | 7 | _......_ | 2 | 75 |
| MIMAT0021985 | aca-miR-7-2-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021984 | aca-miR-7-1-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021951 | aca-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021526 | asu-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021367 | mtr-miR5296 | 2 | ......__ | 7 | 75 |
| MIMAT0032120 | ath-miR5017-5p | 2 | _......_ | 7 | 75 |
| MIMAT0021009 | gma-miR1535b | 2 | __...... | 7 | 75 |
| MIMAT0020193 | dme-miR-4967-3p | 7 | _......_ | 2 | 75 |
| MIMAT0020457 | bfl-miR-4875c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019545 | pma-miR-375b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019543 | pma-miR-375a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0018384 | ngi-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0018795 | tca-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017991 | hsa-miR-3613-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017947 | ath-miR4239 | 1 | _......_ | 6 | 75 |
| MIMAT0016823 | cin-miR-4203-3p | 7 | __...... | 2 | 75 |
| MIMAT0016772 | cin-miR-4164-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016758 | cin-miR-4154-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016710 | cin-miR-4119-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016692 | cin-miR-4105-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016658 | cin-miR-4084-3p | 6 | __...... | 1 | 75 |
| MIMAT0017839 | rno-miR-3065-5p | 8 | _......_ | 3 | 75 |
| MIMAT0015863 | ppy-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0015699 | nvi-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0017687 | aly-miR837-5p | 3 | __...... | 8 | 75 |
| MIMAT0017639 | aly-miR852-5p | 8 | _......_ | 3 | 75 |
| MIMAT0017626 | aly-miR840-3p | 1 | __...... | 6 | 75 |
| MIMAT0017607 | aly-miR827-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017600 | aly-miR822-3p | 7 | __...... | 2 | 75 |
| MIMAT0017585 | aly-miR403a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015595 | bmo-miR-3391-3p | 8 | ......__ | 3 | 75 |
| MIMAT0015544 | bmo-miR-3358 | 2 | _......_ | 7 | 75 |
| MIMAT0015419 | bmo-miR-3236 | 8 | __...... | 3 | 75 |
| MIMAT0015066 | hsa-miR-3065-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014836 | mmu-miR-3065-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014774 | api-miR-3037 | 8 | ......__ | 3 | 75 |
| MIMAT0014572 | tgu-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0031020 | tgu-miR-7-4-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014632 | tgu-miR-7-1-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014443 | cqu-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0014298 | aae-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0015365 | zma-miR827-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013811 | osa-miR2864.2 | 1 | __...... | 6 | 75 |
| MIMAT0013239 | eca-miR-545 | 8 | _......_ | 3 | 75 |
| MIMAT0013649 | bmo-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012700 | isc-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0012664 | dpu-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0013503 | mtr-miR2676f | 3 | __...... | 8 | 75 |
| MIMAT0013502 | mtr-miR2676e | 3 | __...... | 8 | 75 |
| MIMAT0013501 | mtr-miR2676d | 3 | __...... | 8 | 75 |
| MIMAT0013500 | mtr-miR2676c | 3 | __...... | 8 | 75 |
| MIMAT0013499 | mtr-miR2676b | 3 | __...... | 8 | 75 |
| MIMAT0013498 | mtr-miR2676a | 3 | __...... | 8 | 75 |
| MIMAT0012490 | dsi-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012420 | dps-miR-2575-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012411 | dps-miR-2570-3p | 1 | ......__ | 6 | 75 |
| MIMAT0012254 | dps-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011934 | bta-miR-2325c | 3 | __...... | 8 | 75 |
| MIMAT0011611 | crm-miR-356 | 1 | _......_ | 6 | 75 |
| MIMAT0009871 | cfa-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0009683 | sko-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0009676 | lgi-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0009544 | cte-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0009052 | dya-miR-274 | 1 | ......__ | 6 | 75 |
| MIMAT0009023 | dwi-miR-274 | 1 | ......__ | 6 | 75 |
| MIMAT0008828 | dse-miR-274 | 1 | ......__ | 6 | 75 |
| MIMAT0008758 | dpe-miR-274 | 1 | ......__ | 6 | 75 |
| MIMAT0008521 | der-miR-274 | 1 | ......__ | 6 | 75 |
| MIMAT0008448 | dan-miR-274 | 1 | ......__ | 6 | 75 |
| MIMAT0008125 | ptr-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0007860 | aga-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0006302 | mml-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0007726 | gga-miR-1808 | 1 | _......_ | 6 | 75 |
| MIMAT0007398 | gma-miR1535a | 2 | __...... | 7 | 75 |
| MIMAT0009195 | oan-miR-7-1-3p | 7 | _......_ | 2 | 75 |
| MIMAT0006987 | oan-miR-7-3p | 7 | _......_ | 2 | 75 |
| MIMAT0005565 | xtr-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0005307 | rno-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005269 | smo-miR1112-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005258 | smo-miR1101-3p | 1 | __...... | 6 | 75 |
| MIMAT0005472 | dme-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004431 | ame-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0004316 | ath-miR866-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032021 | ath-miR840-3p | 1 | __...... | 6 | 75 |
| MIMAT0004252 | ath-miR833a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003476 | mmu-miR-669b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003362 | gga-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0003070 | tni-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0003069 | fru-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0001876 | dre-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0015185 | zma-miR166j-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001237 | dps-miR-274 | 1 | ......__ | 6 | 75 |
| MIMAT0022870 | osa-miR166k-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031914 | ath-miR403-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000739 | mmu-miR-375-3p | 1 | _......_ | 6 | 75 |
| MIMAT0000728 | hsa-miR-375 | 1 | _......_ | 6 | 75 |
| MIMAT0004670 | mmu-miR-7a-1-3p | 7 | _......_ | 2 | 75 |
| MIMAT0000607 | rno-miR-7a-1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004554 | hsa-miR-7-2-3p | 7 | _......_ | 2 | 75 |
| MIMAT0004553 | hsa-miR-7-1-3p | 7 | _......_ | 2 | 75 |
