Predicted targets for your query miRNA sequence
>hsv1-miR-h3*
cuccugac
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberGeneStartAlignmentEnd% Identity
Query1ctcctgac8
ENST00000574221ENSG00000262486 transcript 616........623100
ENST00000574221ENSG00000262486 transcript 342......._33687
ENST00000574221ENSG00000262486 transcript 952......._94687
ENST00000574221ENSG00000262486 transcript 1198......._119287
ENST00000572797GRCh37:HSCHR19LRC 1139........1146100
ENST00000572797GRCh37:HSCHR19LRC 87......._9387
ENST00000572797GRCh37:HSCHR19LRC 865......._85987
ENST00000572797GRCh37:HSCHR19LRC 1475......._146987
ENST00000572797GRCh37:HSCHR19LRC 1721......._171587
ENST00000570800ENSG00000263066 transcript 616........623100
ENST00000570800ENSG00000263066 transcript 342......._33687
ENST00000570800ENSG00000263066 transcript 952......._94687
ENST00000570800ENSG00000263066 transcript 1198......._119287
ENST00000573118GRCh37:HSCHR19LRC 1139........1146100
ENST00000573118GRCh37:HSCHR19LRC 87......._9387
ENST00000573118GRCh37:HSCHR19LRC 865......._85987
ENST00000573118GRCh37:HSCHR19LRC 1475......._146987
ENST00000573118GRCh37:HSCHR19LRC 1721......._171587
ENST00000574189ENSG00000263149 transcript 119........112100
ENST00000574189ENSG00000263149 transcript 137......._13187
ENST00000574189ENSG00000263149 transcript 175......._16987
ENST00000576525ENSG00000262586 transcript 21........28100
ENST00000572299ENSG00000262548 transcript 616........623100
ENST00000572299ENSG00000262548 transcript 342......._33687
ENST00000572299ENSG00000262548 transcript 952......._94687
ENST00000572299ENSG00000262548 transcript 1198......._119287
ENST00000577002GRCh37:HSCHR19LRC 1139........1146100
ENST00000577002GRCh37:HSCHR19LRC 87......._9387
ENST00000577002GRCh37:HSCHR19LRC 865......._85987
ENST00000577002GRCh37:HSCHR19LRC 1475......._146987
ENST00000577002GRCh37:HSCHR19LRC 1721......._171587
ENST00000577084ENSG00000262575 transcript 119........112100
ENST00000577084ENSG00000262575 transcript 137......._13187
ENST00000577084ENSG00000262575 transcript 175......._16987
ENST00000570660ENSG00000262422 transcript 21........28100
ENST00000594804ENSG00000268924 transcript 724........731100
ENST00000601868ENSG00000268459 transcript 1012........1005100
ENST00000601868ENSG00000268459 transcript 334......._32887
ENST00000602202ENSG00000269322 transcript 202........209100
ENST00000602392GRCh37:HG344 892........899100
ENST00000602392GRCh37:HG344 230......._22487
ENST00000602392GRCh37:HG344 790......._79687
ENST00000595303GRCh37:HG344 171........178100
ENST00000609954ENSG00000272725 transcript 493........486100
ENST00000607167ENSG00000271942 transcript 241........248100
ENST00000607301GRCh37:HG1074 1968........1961100
ENST00000607301GRCh37:HG1074 1648......._164287
ENST00000602364GRCh37:HG1426 1297........1304100
ENST00000603348ENSG00000271516 transcript 616........623100
ENST00000603348ENSG00000271516 transcript 342......._33687
ENST00000603348ENSG00000271516 transcript 952......._94687
ENST00000603348ENSG00000271516 transcript 1198......._119287
ENST00000605768GRCh37:HG1079 1139........1146100
ENST00000605768GRCh37:HG1079 87......._9387
ENST00000605768GRCh37:HG1079 865......._85987
ENST00000605768GRCh37:HG1079 1475......._146987
ENST00000605768GRCh37:HG1079 1721......._171587
ENST00000604153ENSG00000270217 transcript 119........112100
ENST00000604153ENSG00000270217 transcript 137......._13187
ENST00000604153ENSG00000270217 transcript 175......._16987
ENST00000605827ENSG00000270687 transcript 21........28100
ENST00000583851ENSG00000264639 transcript 1088........1095100
ENST00000583851ENSG00000264639 transcript 578......._58487
ENST00000583851ENSG00000264639 transcript 1053......._104787
ENST00000602231ENSG00000268825 transcript 980........973100
ENST00000602231ENSG00000268825 transcript 1539........1532100
ENST00000602231ENSG00000268825 transcript 1627......._163387
ENST00000593465ENSG00000269251 transcript 2788........2781100
ENST00000582794ENSG00000266797 transcript 259........266100
ENST00000582794ENSG00000266797 transcript 224......._21887
ENST00000584595ENSG00000266797 transcript 1061........1068100
ENST00000584595ENSG00000266797 transcript 1026......._102087
ENST00000598888ENSG00000269183 transcript 506........499100
ENST00000595365ENSG00000269817 transcript 75........82100
ENST00000595365ENSG00000269817 transcript 548........555100
ENST00000594631ENSG00000268776 transcript 153........146100
ENST00000594631ENSG00000268776 transcript 56......._6287
ENST00000596317ENSG00000268347 transcript 153........146100
ENST00000572296GRCh37:HG1257 284........277100
ENST00000576405GRCh37:HG1257 1789........1796100
ENST00000576405GRCh37:HG1257 2170........2163100
ENST00000576405GRCh37:HG1257 1246......._124087
ENST00000576405GRCh37:HG1257 1680......._168687
ENST00000574124GRCh37:HG1257 229........236100
ENST00000572051GRCh37:HG1257 299........306100
ENST00000577117GRCh37:HG1257 2501........2508100
ENST00000577117GRCh37:HG1257 3250........3257100
ENST00000577117GRCh37:HG1257 4008......._400287
ENST00000582299ENSG00000265018 transcript 2036........2043100
ENST00000575125ENSG00000262461 transcript 474........481100
ENST00000575125ENSG00000262461 transcript 2090......._209687
ENST00000573748ENSG00000262461 transcript 470........477100
ENST00000573748ENSG00000262461 transcript 2020......._202687
ENST00000576332ENSG00000262461 transcript 470........477100
ENST00000576332ENSG00000262461 transcript 1842......._184887
ENST00000573109GRCh37:HG1257 1982........1989100
ENST00000573109GRCh37:HG1257 1878......._188487
ENST00000580094GRCh37:HG1211 1534........1541100
ENST00000580094GRCh37:HG1211 3912......._390687
ENST00000578343ENSG00000265124 transcript 2036........2043100
ENST00000599102GRCh37:HG1211 133........140100
ENST00000599102GRCh37:HG1211 207......._21387
ENST00000581663ENSG00000263471 transcript 787........780100
ENST00000573343ENSG00000262844 transcript 405........412100
ENST00000610045ENSG00000272624 transcript 622........615100
ENST00000610045ENSG00000272624 transcript 1002......._99687
ENST00000571398ENSG00000263282 transcript 190........197100
ENST00000585110GRCh37:HG1211 461........468100
ENST00000585110GRCh37:HG1211 247......._25387
ENST00000502451GRCh37:3:13974553:13978444:1 3171........3164100
ENST00000502451GRCh37:3:13974553:13978444:1 1107......._111387
ENST00000502451GRCh37:3:13974553:13978444:1 1381_.......138787
ENST00000502451GRCh37:3:13974553:13978444:1 3004......._301087
ENST00000434751ENSG00000236062 transcript 119........126100
ENST00000445082GRCh37:3:10064611:10068010:-1 883........876100
ENST00000445082GRCh37:3:10064611:10068010:-1 977......._97187
ENST00000432401GRCh37:3:10055932:10068041:-1 1130........1137100
ENST00000430621GRCh37:3:10045952:10048674:1 26........19100
ENST00000326237GRCh37:3:10028595:10046928:1 1931........1924100
ENST00000436002ENSG00000231821 transcript 378........371100
ENST00000538190ENSG00000256528 transcript 367........374100
ENST00000605013ENSG00000270921 transcript 440........447100
ENST00000605013ENSG00000270921 transcript 115_.......12187
ENST00000605013ENSG00000270921 transcript 2179_.......218587
ENST00000457911ENSG00000241717 transcript 2047........2054100
ENST00000457911ENSG00000241717 transcript 1212......._121887
ENST00000457911ENSG00000241717 transcript 1979......._197387
ENST00000417863ENSG00000215268 transcript 1402........1409100
ENST00000561760ENSG00000260284 transcript 353........346100
ENST00000412293GRCh37:16:432097:442960:1 1249........1256100
ENST00000574727GRCh37:17:6757180:6805511:1 4125........4118100
ENST00000574727GRCh37:17:6757180:6805511:1 180......._17487
ENST00000574727GRCh37:17:6757180:6805511:1 538......._54487
ENST00000574727GRCh37:17:6757180:6805511:1 990......._99687
ENST00000574727GRCh37:17:6757180:6805511:1 1513......._151987
ENST00000525719ENSG00000255095 transcript 484........491100
ENST00000531680GRCh37:17:3143970:3144559:1 484........491100
ENST00000358446ENSG00000196737 transcript 518........525100
ENST00000382252ENSG00000205903 transcript 468........461100
ENST00000427912ENSG00000205903 transcript 1024........1017100
ENST00000427985ENSG00000235944 transcript 2040........2033100
ENST00000427985ENSG00000235944 transcript 949......._94387
ENST00000427985ENSG00000235944 transcript 2562......._256887
ENST00000422825GRCh37:7:5886953:5893996:1 309........316100
ENST00000422825GRCh37:7:5886953:5893996:1 687......._69387
ENST00000530367ENSG00000159904 transcript 1030........1037100
ENST00000530367ENSG00000159904 transcript 485......._47987
ENST00000565889ENSG00000260562 transcript 272........265100
ENST00000538670ENSG00000183935 transcript 1029........1036100
ENST00000538670ENSG00000183935 transcript 266_.......27287
ENST00000317490ENSG00000178642 transcript 1538........1545100
ENST00000317490ENSG00000178642 transcript 167......._16187
ENST00000317490ENSG00000178642 transcript 1177......._118387
ENST00000317490ENSG00000178642 transcript 1755......._174987
ENST00000539195ENSG00000215791 transcript 879........886100
ENST00000539195ENSG00000215791 transcript 272......._26687
ENST00000412397ENSG00000217801 transcript 126........119100
ENST00000412397ENSG00000217801 transcript 620_.......62687
ENST00000440782ENSG00000229376 transcript 440........447100
ENST00000440782ENSG00000229376 transcript 109_.......11587
ENST00000440782ENSG00000229376 transcript 2250_.......225687
ENST00000432723ENSG00000233653 transcript 434........441100
ENST00000432723ENSG00000233653 transcript 109_.......11587
ENST00000432723ENSG00000233653 transcript 2244_.......225087
ENST00000442987ENSG00000233750 transcript 523........530100
ENST00000442987ENSG00000233750 transcript 3276........3283100
ENST00000442987ENSG00000233750 transcript 198_.......20487
ENST00000442987ENSG00000233750 transcript 2333_.......233987
ENST00000594647ENSG00000268020 transcript 52........59100
ENST00000520314GRCh37:12:9709910:9728864:1 3520........3513100
ENST00000520314GRCh37:12:9709910:9728864:1 3070......._307687
ENST00000520314GRCh37:12:9709910:9728864:1 3938_.......394487
ENST00000520314GRCh37:12:9709910:9728864:1 4247_.......425387
ENST00000518709ENSG00000214776 transcript 201........194100
ENST00000518709ENSG00000214776 transcript 2942_.......294887
ENST00000366421ENSG00000203614 transcript 1077........1070100
ENST00000366421ENSG00000203614 transcript 56......._5087
ENST00000456608ENSG00000238132 transcript 409........402100
ENST00000456608ENSG00000238132 transcript 132......._12687
ENST00000452841ENSG00000235500 transcript 1784........1777100
ENST00000452841ENSG00000235500 transcript 772_.......77887
ENST00000443465ENSG00000215604 transcript 228........235100
ENST00000540396ENSG00000256720 transcript 257........250100
ENST00000544395ENSG00000177586 transcript 403........410100
ENST00000425390ENSG00000238152 transcript 403........410100
ENST00000366326ENSG00000203512 transcript 175........182100
ENST00000366327ENSG00000203513 transcript 175........182100
ENST00000605264ENSG00000270542 transcript 146........139100
ENST00000366466ENSG00000203659 transcript 221........228100
ENST00000359975ENSG00000203543 transcript 193........200100
ENST00000458710ENSG00000224416 transcript 117........124100
ENST00000438342GRCh37:9:19461158:19464522:-1 14........21100
ENST00000543250ENSG00000257078 transcript 202........209100
ENST00000515723GRCh37:9:2992062:3014177:-1 370........377100
ENST00000422868ENSG00000236594 transcript 99........106100
ENST00000455592ENSG00000235330 transcript 437........444100
ENST00000598100GRCh37:9:477750:478423:1 543........550100
ENST00000447861GRCh37:21:14410481:14424439:1 1841........1848100
ENST00000447861GRCh37:21:14410481:14424439:1 1737......._174387
ENST00000602547GRCh37:12:6993846:6994950:1 892........899100
ENST00000602547GRCh37:12:6993846:6994950:1 230......._22487
ENST00000602547GRCh37:12:6993846:6994950:1 790......._79687
ENST00000274820GRCh37:12:6982817:6984886:1 171........178100
ENST00000541242ENSG00000256913 transcript 449........456100
ENST00000333851ENSG00000215512 transcript 2096........2103100
ENST00000455308GRCh37:18:15313555:15330262:-1 2106........2113100
ENST00000571982GRCh37:HSCHR5 966........973100
ENST00000571982GRCh37:HSCHR5 1681_.......167587
ENST00000573162GRCh37:HSCHR5 966........973100
ENST00000575263GRCh37:HSCHR5 1086........1079100
ENST00000575263GRCh37:HSCHR5 1190......._118487
ENST00000430510ENSG00000256786 transcript 141........148100
ENST00000424015ENSG00000236396 transcript 173........180100
ENST00000424015ENSG00000236396 transcript 631......._63787
ENST00000588001ENSG00000236396 transcript 341........348100
ENST00000588001ENSG00000236396 transcript 799......._80587
ENST00000538799ENSG00000256902 transcript 354........361100
ENST00000572432ENSG00000263291 transcript 445........438100
ENST00000572432ENSG00000263291 transcript 1002......._99687
ENST00000398317ENSG00000214434 transcript 672........679100
ENST00000549737ENSG00000257305 transcript 238........245100
ENST00000603371ENSG00000271519 transcript 429........422100
ENST00000603371ENSG00000271519 transcript 2327........2334100
ENST00000603371ENSG00000271519 transcript 3733......._372787
ENST00000603371ENSG00000271519 transcript 4503......._449787
ENST00000603371ENSG00000271519 transcript 4668......._467487
ENST00000434731ENSG00000233880 transcript 369........362100
ENST00000427910ENSG00000229347 transcript 24........17100
ENST00000427910ENSG00000229347 transcript 615......._62187
ENST00000427910ENSG00000229347 transcript 939......._93387
ENST00000551852ENSG00000257775 transcript 197........204100
ENST00000358001ENSG00000196564 transcript 457........450100
ENST00000603599ENSG00000271010 transcript 258........251100
ENST00000511021ENSG00000249866 transcript 367........374100
ENST00000511021ENSG00000249866 transcript 164_.......17087
ENST00000505858ENSG00000248364 transcript 367........374100
ENST00000505750ENSG00000250710 transcript 342........349100
ENST00000508865ENSG00000251229 transcript 355........348100
ENST00000416620ENSG00000232111 transcript 495........488100
ENST00000416620ENSG00000232111 transcript 125_.......11987
ENST00000416620ENSG00000232111 transcript 3765......._375987
ENST00000416620ENSG00000232111 transcript 8534......._852887
ENST00000416620ENSG00000232111 transcript 9466......._946087
ENST00000416620ENSG00000232111 transcript 11556......._1155087
ENST00000463344ENSG00000237490 transcript 104........111100
ENST00000403568ENSG00000220693 transcript 1175........1182100
ENST00000403568ENSG00000220693 transcript 1387........1380100
ENST00000403568ENSG00000220693 transcript 481......._47587
ENST00000403568ENSG00000220693 transcript 1509_.......150387
ENST00000414523ENSG00000256143 transcript 1441........1448100
ENST00000414523ENSG00000256143 transcript 881......._87587
ENST00000378211ENSG00000237470 transcript 459........452100
ENST00000378211ENSG00000237470 transcript 287......._28187
ENST00000454630ENSG00000237470 transcript 230........223100
ENST00000454630ENSG00000237470 transcript 58......._5287
ENST00000431186ENSG00000235623 transcript 424........431100
ENST00000447253ENSG00000203414 transcript 250........243100
ENST00000442900ENSG00000228330 transcript 35........42100
ENST00000442900ENSG00000228330 transcript 474......._48087
ENST00000367461ENSG00000198683 transcript 136........143100
ENST00000592994ENSG00000267639 transcript 442........449100
ENST00000592994ENSG00000267639 transcript 117_.......12387
ENST00000592994ENSG00000267639 transcript 2207_.......221387
ENST00000433955ENSG00000230816 transcript 227........234100