../../tmp/servers/virsirnadb/546079275
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12061aaaggtccgtgagccgctt19
AJ238799.1 Hepatitis C virus type 1b complete genome, isolate Con1 9545...................9563100
DQ071885.1 Hepatitis C virus subtype 1b polyprotein mRNA, complete cds 9545...................9563100
EU857431.1 Hepatitis C virus subtype 1b isolate Whu, complete genome 9543...................9561100
D85516.1 Hepatitis C virus genomic RNA, complete cds 9475.................a.949394
AF011751.1 Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds 9539.................a.955794
AF011752.1 Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds 9539.................a.955794
AF011753.1 Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds 9539.................a.955794
D89815.1 Hepatitis C virus genomic RNA, complete sequence 9488.................a.950694
AF054247.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete9535.................a.955394
AF054248.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete9535.................a.955394
AF054249.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete9536.................a.955494
AF176573.1 Hepatitis C virus subtype 1b strain 274933RU, complete genome 9540.................a.955894
AB016785.1 Hepatitis C virus genomic RNA, complete sequence 9478.................a.949694
AF169002.1 Hepatitis C virus subtype 2a isolate NDM228, complete genome 9600.................a.961894
AF169003.1 Hepatitis C virus subtype 2a isolate G2aK1, complete genome 9633.................a.965194
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 9593.................a.961194
AF169005.1 Hepatitis C virus subtype 2a isolate NDM59, complete genome 9640.................a.965894
AF271632.1 Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome 9558.................a.957694
AB030907.1 Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome 9594.................a.961294
AJ278830.1 Hepatitis C virus genomic RNA for polyprotein gene 9550.................a.956894
AB049088.1 Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 9556.................a.957494
AB049089.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT109511.................a.952994
AB049090.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149511.................a.952994
AB049091.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149487.................a.950594
AB049095.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT169525.................a.954394
AB049101.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT229538.................a.955694
AF333324.1 Hepatitis C virus type 1b polyprotein mRNA, complete cds 9527.................a.954594
AB047639.1 Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome 9618.................a.963694
AB047640.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 9614.................a.963294
AB047641.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 9599.................a.961794
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 9618.................a.963694
AB047643.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 9581.................a.959994
AB047644.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 9631.................a.964994
AB047645.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 9623.................a.964194
AF356827.1 Hepatitis C virus subtype 1b isolate HCV-S1, complete genome 9549.................a.956794
AY045702.1 Hepatitis C virus isolate HCR6, complete genome 9551.................a.956994
AF139594.2 Hepatitis C virus subtype 1b strain HCV-N, complete genome 9556.................a.957494
AB080299.1 Hepatitis C virus genomic RNA, complete genome, isolate:M1LE 9527.................a.954594
AY460204.1 Hepatitis C virus from Shanghai, complete genome 9517.................a.953594
AY746460.1 Hepatitis C virus genotype 2a polyprotein gene, complete cds 9629.................a.964794
D84263.2 Hepatitis C virus (isolate VN235) genomic RNA, complete genome 9555.................a.957394
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 9541.................a.955994
D84265.2 Hepatitis C virus (isolate VN004) genomic RNA, complete genome 9562.................a.958094
AB191333.1 Hepatitis C virus genomic RNA, complete genome, strain:0 9527.................a.954594
AB249644.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9499.................a.951794
EF621489.1 Hepatitis C virus subtype 1a strain HC-TN, complete genome 9539.................a.955794
EU363761.1 Recombinant Hepatitis C virus H77C/JFH1, complete genome 9606.................a.962494
AB426117.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9499.................a.951794
AB435162.2 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9561.................a.957994
AB442219.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9527.................a.954594
AB442220.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9527.................a.954594
AB442221.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9527.................a.954594
AB442222.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9530.................a.954894
FN435993.1 Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN9553.................a.957194
AB520610.1 Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC9538.................a.955694
GU133617.1 Hepatitis C virus subtype 1b, complete genome 9586.................a.960494
D84262.2 Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC9568.................a.958694
AF177036.1 Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen9651.................a.966994
AF009606.1 Hepatitis C virus subtype 1a polyprotein gene, complete cds 9586.................a.960494
AJ132997.1 Hepatitis C virus, complete genome, isolate HCV-AD78P1 9473.......g.........a.949189
FN666428.2 Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol9533...............a.a.955189