../../tmp/servers/virsirnadb/1010117750
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi21911actagtgttcacccaggcg19
D11092.1HPECG Hepatitis E virus genomic RNA, complete genome 3396...................3414100
D10330.1HPEHEV Hepatitis E virus genomic RNA 3396...................3414100
M73218.1HPESVP Hepatitis E structural and nonstructural protein mRNA, complete3396...................3414100
L25595.1HPEORFS Hepatitis E virus ORFs 1-3 3395...................3413100
L25547.1HPEGENA Hepatitis E virus unknown genes 3395...................3413100
X98292.1 Hepatitis E virus, complete genome 3395...................3413100
D11093.1HPEUIGH Hepatitis E virus complete genome sequence 3396...................3414100
X99441.1 Hepatitis E virus ORF1, ORF2 & ORF3 3396...................3414100
AF185822.1 Hepatitis E virus nonstructural polyprotein gene, partial cds; struct3345...................3363100
AF076239.3 Hepatitis E virus from Hyderabad, India, complete genome 3396...................3414100
AF459438.1 Hepatitis E virus from North India, complete genome 3396...................3414100
AY230202.1 Hepatitis E virus from Morocco, complete genome 3394...................3412100
DQ459342.1 Hepatitis E virus from India, complete genome 3396...................3414100
NC_001434.1 Hepatitis E virus, complete genome 3372.................._338994
M80581.1HPEA Hepatitis E Virus, complete cds 3367_..................338494
M94177.1HPCEGENOM Hepataitis E virus complete genome 3396.................._341394
AF444002.1 Hepatitis E virus clone pSK-HEV-2, complete genome 3395_..................341294
AF444003.1 Hepatitis E virus clone pSK-HEV-3, complete genome 3395_..................341294
AF051830.1 Hepatitis E virus strain TK15/92, complete genome 3396.t.................341494
AB097811.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJ13-3436............t......345494
AY204877.1 Hepatitis E virus strain T3 from Chad polyprotein gene, partial cds; 3355.t.................337394
AY723745.1 Hepatitis E virus isolate IND-SW-00-01, complete genome 3436.t.................345494
AB220973.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3436.t.................345494
AB220976.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3436............t......345494
AB220977.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3436............t......345494
AB220979.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3436............t......345494
FJ457024.1 Hepatitis E virus isolate HEV-H from India, complete genome 3396.........t.........341494
AB291959.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JTC-K3396............t......341494
AB291965.1 Hepatitis E virus genomic RNA, complete genome, isolate: HRC-HE14C 3436............t......345494
AB291966.1 Hepatitis E virus genomic RNA, complete genome, isolate: JST-KitAsa043436............t......345494
AB291967.1 Hepatitis E virus genomic RNA, complete genome, isolate: JKO-Aba-FH063436............t......345494
AB291968.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMM-Aba06C 3436............t......345494
AB481227.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-H3436............t......345494
AB480825.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3436.t.................345494
EF570133.1 Hepatitis E virus isolate SH-SW-zs1, complete genome 3423__.................343989
AB369690.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E3423_..g...............344089
AB080575.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JI4 3367.........t..t......338589
AB074917.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JKK-S3420.t..........t......343889
AB091395.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSN-S3420.........t..t......343889
AB097812.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA1 3436.........t..t......345489
AB099347.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JK4 3436.........t..t......345489
AB200239.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSN-Sap-FH023437.........t..t......345589
AB193176.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSF-Tot03C 3437.........t..t......345589
AB193177.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Sap01C 3437.........t..t......345589
AB193178.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Nii02L 3411.........t..t......342989
AB220971.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3436.........t..t......345489
AB220972.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3436.t..........t......345489
AB220975.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3436.t..........t......345489
AB220978.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3436.t..........t......345489
AB253420.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:HEVN2 3412_..g.............._342884
DQ450072.1 Hepatitis E virus isolate swCH31, complete genome 3439__.g...............345584
AY594199.1 Swine hepatitis E virus strain swCH25, complete genome 3445_..g..a............346284
AB369688.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E3414_..g.....t.........343184
AB369688.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E1727___..........g.c.__174063
FJ705359.1 Hepatitis E virus isolate wbGER27, complete genome 3426__....t..........._344178
AB220974.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 3438__....a..t.........345478
EF206691.1 Avian hepatitis E virus from USA, complete genome 2918__..........t....t.293478
AB369689.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E3405_..g..t..........._342178
AB369689.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E1976______..........___198552
AB291964.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYK-Tok03C 3432_..g...........a.._344878
FJ610232.1 Swine hepatitis E virus isolate swCH189, complete genome 3439__.g.....t.........345578
GU188851.1 Swine hepatitis E virus isolate WH09, complete genome 3438__....a..t.........345478
GU119961.3 Swine hepatitis E virus isolate CHN-XJ-SW13, complete genome 3439__....a..t.........345578
AB591734.1 Hepatitis E virus genomic RNA, complete genome, strain: JMNG36-Oki08 3437_...........a..a.._345378
AB591734.1 Hepatitis E virus genomic RNA, complete genome, strain: JMNG36-Oki08 1996______..........___200552
AJ272108.1 Hepatitis E virus (genotype 4) complete genome sequence 3437_..c..a..t.........345478
EU676172.2 Swine hepatitis E virus isolate swGX40, complete genome 3432__.g..a..........._344773
EU366959.1 Hepatitis E virus isolate swGX32, complete genome 3441____..a..........._345468
AB602441.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJOY_06 752__.c...cg........._73768
AF082843.1 Swine hepatitis E virus nonstructural polyprotein and putative capsid1170_________..........117952
AF082843.1 Swine hepatitis E virus nonstructural polyprotein and putative capsid1980______..........___198952
AF060669.1 Hepatitis E virus strain HEV-US2 polyprotein (ORF1), (ORF3), and caps1196_________..........120552
AF060669.1 Hepatitis E virus strain HEV-US2 polyprotein (ORF1), (ORF3), and caps2006______..........___201552
AY115488.1 Swine hepatitis E virus strain Arkell, complete genome 1187_________..........119652
AY115488.1 Swine hepatitis E virus strain Arkell, complete genome 1997______..........___200652
AF455784.1 Hepatitis E virus strain Osh 205, complete genome 1999______..........___200852
AY575857.1 Hepatitis E virus clone pSHEV-1, complete genome 1187_________..........119652
AY575857.1 Hepatitis E virus clone pSHEV-1, complete genome 1997______..........___200652
AY575858.1 Hepatitis E virus clone pSHEV-2, complete genome 1187_________..........119652
AY575858.1 Hepatitis E virus clone pSHEV-2, complete genome 1997______..........___200652
AY575859.1 Hepatitis E virus clone pSHEV-3, complete genome 1187_________..........119652
AY575859.1 Hepatitis E virus clone pSHEV-3, complete genome 1997______..........___200652
AB222182.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJSG1 1186_________..........119552
AB246676.1 Hepatitis E virus genomic RNA, complete genome, isolate:HEVN1 1186_________..........119552
AB290312.1 Hepatitis E virus genomic RNA, complete genome, clone: swMN06-A1288 1996______..........___200552
AB369687.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E1976______..........___198552
AB369691.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E1166_________..........117552
EU723513.1 Swine hepatitis E virus isolate SW627, complete genome 1971______..........___198052
EU723515.1 Swine hepatitis E virus isolate SWP7, complete genome 1971______..........___198052
FJ426404.1 Swine hepatitis E virus isolate swKOR-2, complete genome 1976______..........___198552
AB291961.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMH-Osa04C 1997______..........___200652
AB291962.1 Hepatitis E virus genomic RNA, complete genome, isolate: JHK-Toy04C 1186_________..........119552
EU723512.2 Swine hepatitis E virus isolate SW626, complete genome 1996______..........___200552
EU723514.2 Swine hepatitis E virus isolate SWP6, complete genome 1996______..........___200552
AB481228.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-M1996______..........___200552
FJ906896.1 Hepatitis E virus isolate GDC46, complete genome 1184_________..........119352
FJ998008.1 Swine hepatitis E virus isolate BB02, complete genome 1971______..........___198052
GU937805.1 Hepatitis E virus isolate ch-bj-n1, complete genome 1186_________..........119552
HQ709170.1 Hepatitis E virus strain Kernow-C1, complete genome 1997______..........___200652
HQ389543.1 Hepatitis E virus strain Kernow-C1, complete genome 1997______..........___200652
HQ389544.1 Hepatitis E virus strain Kernow-C1, complete genome 1997______..........___200652