../../tmp/servers/virsirnadb/917813330
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12081aggtccgtgagccgcttga19
AJ238799.1 Hepatitis C virus type 1b complete genome, isolate Con1 9547...................9565100
DQ071885.1 Hepatitis C virus subtype 1b polyprotein mRNA, complete cds 9547...................9565100
EU857431.1 Hepatitis C virus subtype 1b isolate Whu, complete genome 9545...................9563100
D85516.1 Hepatitis C virus genomic RNA, complete cds 9477...............a...949594
AF011751.1 Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds 9541...............a...955994
AF011752.1 Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds 9541...............a...955994
AF011753.1 Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds 9541...............a...955994
D89815.1 Hepatitis C virus genomic RNA, complete sequence 9490...............a...950894
AF054247.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete9537...............a...955594
AF054248.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete9537...............a...955594
AF054249.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete9538...............a...955694
AF176573.1 Hepatitis C virus subtype 1b strain 274933RU, complete genome 9542...............a...956094
AB016785.1 Hepatitis C virus genomic RNA, complete sequence 9480...............a...949894
AF169002.1 Hepatitis C virus subtype 2a isolate NDM228, complete genome 9602...............a...962094
AF169003.1 Hepatitis C virus subtype 2a isolate G2aK1, complete genome 9635...............a...965394
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 9595...............a...961394
AF169005.1 Hepatitis C virus subtype 2a isolate NDM59, complete genome 9642...............a...966094
AF271632.1 Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome 9560...............a...957894
AB030907.1 Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome 9596...............a...961494
AJ278830.1 Hepatitis C virus genomic RNA for polyprotein gene 9552...............a...957094
AB049088.1 Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 9558...............a...957694
AB049089.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT109513...............a...953194
AB049090.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149513...............a...953194
AB049091.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149489...............a...950794
AB049095.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT169527...............a...954594
AB049101.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT229540...............a...955894
AF333324.1 Hepatitis C virus type 1b polyprotein mRNA, complete cds 9529...............a...954794
AB047639.1 Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome 9620...............a...963894
AB047640.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 9616...............a...963494
AB047641.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 9601...............a...961994
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 9620...............a...963894
AB047643.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 9583...............a...960194
AB047644.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 9633...............a...965194
AB047645.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 9625...............a...964394
AF356827.1 Hepatitis C virus subtype 1b isolate HCV-S1, complete genome 9551...............a...956994
AY045702.1 Hepatitis C virus isolate HCR6, complete genome 9553...............a...957194
AF139594.2 Hepatitis C virus subtype 1b strain HCV-N, complete genome 9558...............a...957694
AB080299.1 Hepatitis C virus genomic RNA, complete genome, isolate:M1LE 9529...............a...954794
AY460204.1 Hepatitis C virus from Shanghai, complete genome 9519...............a...953794
AY746460.1 Hepatitis C virus genotype 2a polyprotein gene, complete cds 9631...............a...964994
D84263.2 Hepatitis C virus (isolate VN235) genomic RNA, complete genome 9557...............a...957594
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 9543...............a...956194
D84265.2 Hepatitis C virus (isolate VN004) genomic RNA, complete genome 9564...............a...958294
AB191333.1 Hepatitis C virus genomic RNA, complete genome, strain:0 9529...............a...954794
AB249644.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9501...............a...951994
EF621489.1 Hepatitis C virus subtype 1a strain HC-TN, complete genome 9541...............a...955994
EU363761.1 Recombinant Hepatitis C virus H77C/JFH1, complete genome 9608...............a...962694
AB426117.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9501...............a...951994
AB435162.2 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9563...............a...958194
AB442219.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9529...............a...954794
AB442220.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9529...............a...954794
AB442221.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9529...............a...954794
AB442222.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9532...............a...955094
FN435993.1 Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN9555...............a...957394
AB520610.1 Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC9540...............a...955894
GU133617.1 Hepatitis C virus subtype 1b, complete genome 9588...............a...960694
D84262.2 Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC9570...............a...958894
AF177036.1 Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen9653...............a...967194
AF009606.1 Hepatitis C virus subtype 1a polyprotein gene, complete cds 9588...............a...960694
AJ132997.1 Hepatitis C virus, complete genome, isolate HCV-AD78P1 9475.....g.........a...949389
FN666428.2 Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol9535.............a.a...955389
DQ988073.1 Hepatitis C virus isolate Eg2 polyprotein gene, partial cds 1011___..g...c.........102673
EU155307.2 Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V353/2002, complet8909_______............892063
EU155364.2 Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V288/2006, complet8908_______............891963