../../tmp/servers/virsirnadb/167569925
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12001agtcacggctagctgtgaa19
D85516.1 Hepatitis C virus genomic RNA, complete cds 9458...................9476100
AF011751.1 Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds 9522...................9540100
AF011752.1 Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds 9522...................9540100
AF011753.1 Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds 9522...................9540100
D89815.1 Hepatitis C virus genomic RNA, complete sequence 9471...................9489100
AF054247.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete9518...................9536100
AF054248.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete9518...................9536100
AF054249.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete9519...................9537100
AJ132997.1 Hepatitis C virus, complete genome, isolate HCV-AD78P1 9456...................9474100
AJ238799.1 Hepatitis C virus type 1b complete genome, isolate Con1 9528...................9546100
AF176573.1 Hepatitis C virus subtype 1b strain 274933RU, complete genome 9523...................9541100
AB016785.1 Hepatitis C virus genomic RNA, complete sequence 9461...................9479100
AF169002.1 Hepatitis C virus subtype 2a isolate NDM228, complete genome 9583...................9601100
AF169003.1 Hepatitis C virus subtype 2a isolate G2aK1, complete genome 9616...................9634100
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 9576...................9594100
AF271632.1 Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome 9541...................9559100
AB030907.1 Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome 9577...................9595100
AJ278830.1 Hepatitis C virus genomic RNA for polyprotein gene 9533...................9551100
AB049088.1 Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 9539...................9557100
AB049089.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT109494...................9512100
AB049090.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149494...................9512100
AB049091.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149470...................9488100
AB049095.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT169508...................9526100
AB049101.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT229521...................9539100
AF333324.1 Hepatitis C virus type 1b polyprotein mRNA, complete cds 9510...................9528100
AB047639.1 Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome 9601...................9619100
AB047641.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 9582...................9600100
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 9601...................9619100
AB047643.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 9564...................9582100
AB047644.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 9614...................9632100
AB047645.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 9606...................9624100
AF356827.1 Hepatitis C virus subtype 1b isolate HCV-S1, complete genome 9532...................9550100
AY045702.1 Hepatitis C virus isolate HCR6, complete genome 9534...................9552100
AF139594.2 Hepatitis C virus subtype 1b strain HCV-N, complete genome 9539...................9557100
AB080299.1 Hepatitis C virus genomic RNA, complete genome, isolate:M1LE 9510...................9528100
AY460204.1 Hepatitis C virus from Shanghai, complete genome 9500...................9518100
AY746460.1 Hepatitis C virus genotype 2a polyprotein gene, complete cds 9612...................9630100
D84263.2 Hepatitis C virus (isolate VN235) genomic RNA, complete genome 9538...................9556100
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 9524...................9542100
D84265.2 Hepatitis C virus (isolate VN004) genomic RNA, complete genome 9545...................9563100
AB191333.1 Hepatitis C virus genomic RNA, complete genome, strain:0 9510...................9528100
DQ071885.1 Hepatitis C virus subtype 1b polyprotein mRNA, complete cds 9528...................9546100
AB249644.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9482...................9500100
EF621489.1 Hepatitis C virus subtype 1a strain HC-TN, complete genome 9522...................9540100
EU363761.1 Recombinant Hepatitis C virus H77C/JFH1, complete genome 9589...................9607100
AB426117.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9482...................9500100
AB435162.2 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9544...................9562100
EU857431.1 Hepatitis C virus subtype 1b isolate Whu, complete genome 9526...................9544100
AB442219.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9510...................9528100
AB442220.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9510...................9528100
AB442221.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9510...................9528100
AB442222.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9513...................9531100
FN435993.1 Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN9536...................9554100
AB520610.1 Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC9521...................9539100
GU133617.1 Hepatitis C virus subtype 1b, complete genome 9569...................9587100
FN666428.2 Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol9516...................9534100
D84262.2 Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC9551...................9569100
AF177036.1 Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen9634...................9652100
AF009606.1 Hepatitis C virus subtype 1a polyprotein gene, complete cds 9569...................9587100
AB047640.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 9598_..................961594
EU260395.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete9315.................._933294
EU255967.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet9287.................._930494
AF169005.1 Hepatitis C virus subtype 2a isolate NDM59, complete genome 9623...........c.......964194
EU155294.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V329/2002, complet9276..............a..._929389
EU155247.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1/2005, complete 9306...g.............._932389
AM910652.2 Hepatitis C virus subtype 1g complete genome 9477.............._____949073
AJ851228.1 Hepatitis C virus gene for polyprotein, genomic RNA, isolate Equatori9469.............______948168