../../tmp/servers/virsirnadb/1643723008
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi19701caactgagcttgccatact19
D28917.1HPCK3A Hepatitis C virus (isolate HCV-K3a/650) genomic RNA, complete g2363.............t.....238194
AF046866.1 Hepatitis C virus subtype 3a strain CB polyprotein gene, complete cds2363....c..............238194
DQ437509.2 Hepatitis C virus isolate 452 polyprotein gene, partial cds 2024.............t.....204294
D17763.1HPCEGS Hepatitis C virus (isolate NZL1) genomic RNA, complete genome 2363.............t.....238194
EF424626.1 Hepatitis C virus subtype 6p isolate QC216, complete genome 2348..........c..a.....236689
DQ480513.1 Hepatitis C virus subtype 6a strain 6a35, complete genome 2319.t..gc.............233784
DQ480514.1 Hepatitis C virus subtype 6a strain 6a63, complete genome 2319.t..gc.............233784
DQ480516.1 Hepatitis C virus subtype 6a strain 6a61, complete genome 2319.t..gc.............233784
DQ480517.1 Hepatitis C virus subtype 6a strain 6a73, complete genome 2319.t..gc.............233784
DQ480520.1 Hepatitis C virus subtype 6a strain 6a67, complete genome 2319.t..gc.............233784
EU246930.1 Hepatitis C virus strain D9 polyprotein gene, complete cds 2337.c..gc.............235584
EU408326.1 Hepatitis C virus isolate 537798 polyprotein precursor, gene, complet2356..........a..g..t..237484
EU256074.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V264/2005, complet7299___.............___731168
EU155366.2 Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V294/2002, complet2959_..t.ct............297678
EF424629.1 Hepatitis C virus subtype 6c isolate Th846, complete genome 2345..........c..a..___236073
EU246933.1 Hepatitis C virus strain D33 polyprotein gene, complete cds 2325....ac..........___234073
X61596.1 Hepatitis C virus core, E1, NS1/E2, NS2, NS3, NS4a, NS4b and NS5 gene7358___............c.__737168
EU155316.2 Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V419/2002, complet7323___............c.__733668
EU256003.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V444/2006, complet1033_____...........c..102068
D14853.1HPCCGS Hepatitis C virus (isolate HC-G9) genomic RNA, complete genome 7375___............____738663
AJ132996.1 Hepatitis C virus, complete genome, isolate HCV-AD78 3022_______............303363
AB049087.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT052986_______............299763
AY051292.1 Hepatitis C virus (isolate India) polyprotein mRNA, complete cds 7375___............____738663
AB080299.1 Hepatitis C virus genomic RNA, complete genome, isolate:M1LE 3017_______............302863
AY587844.1 Hepatitis C virus strain N589 polyprotein gene, complete cds 2965_______............297663
AY651061.1 Hepatitis C virus isolate Khaja1, complete genome 7375___............____738663
AB154183.1 Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola3005_______............301663
EF407423.1 Hepatitis C virus isolate 8028 polyprotein gene, complete cds 7321___............____733263
EF407455.1 Hepatitis C virus isolate 7065 polyprotein gene, complete cds 7335___............____734663
EF407461.1 Hepatitis C virus isolate 5004 polyprotein gene, complete cds 2997_______............300863
EF407470.1 Hepatitis C virus isolate 4064 polyprotein gene, complete cds 2969_______............298063
EF407480.1 Hepatitis C virus isolate 3043 polyprotein gene, complete cds 2964_______............297563
EU155379.1 Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V29/2003, complete7271___............____728263
EU362897.1 Hepatitis C virus isolate 7065_FU24 polyprotein (pol) gene, complete 7334___............____734563
EU155213.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V101/2004, complet7304___............____731563
EU155227.2 Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V157/2003, complet2965_______............297663
EU482831.1 Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V25/2003, complete7281___............____729263
EU482857.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V263/2005, complet7292___............____730363
EU482881.1 Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V383/2003, complet2974_______............298563
EU155250.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V358/2006, complet7300___............____731163
EU155268.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V396/2006, complet7270___............____728163
EU155298.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V334/2002, complet7305___............____731663
EU155323.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V429/2002, complet7286___............____729763
EU569723.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V13/2005, complete7294___............____730563
EU255930.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V237/2005, complet7301___............____731263
EU255933.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V112/2003, complet7283___............____729463
EU255940.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V433/2006, complet7308___............____731963
EU255941.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V697/2006, complet7307___............____731863
EU255950.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V241/2005, complet7293___............____730463
EU256064.1 Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V376/2006, complet2965_______............297663
EU256068.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V405/2006, complet7295___............____730663
EU256090.1 Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V162/2002, complet2965_______............297663
EU256097.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V324/2001, complet7301___............____731263
EU255999.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V116/2002, complet7288___............____729963
EU256004.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V45/2005, complete7282___............____729363
EU256031.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V89/2006, complete7299___............____731063
EU256046.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V392/2006, complet7301___............____731263
EU256069.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V229/2006, complet7282___............____729363
EU255973.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V180/1990, complet7296___............____730763
EU781824.1 Hepatitis C virus subtype 1a isolate DN14, complete genome 7321___............____733263
EU862836.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V244/2003, complet7301___............____731263