../../tmp/servers/virsirnadb/1173307524
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi20251ccaacagtagacctggtag19
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 299...................317100
EF186077.1 Human rhinovirus QPM polyprotein gene, complete cds 123................c..14194
GQ323774.1 Human rhinovirus C strain QCE, complete genome 271................c..28994
EF582387.1 Human rhinovirus C strain 026, complete genome 298...g............c..31689
EF582387.1 Human rhinovirus C strain 026, complete genome 2491_..........________250052
DQ875932.2 Human rhinovirus C strain NY-074 polyprotein gene, complete cds 297...g............c..31589
M16248.1HRV89 Human rhinovirus type 89 (HRV89), complete genome 301...g............c..31989
DQ473493.1 Human rhinovirus 15, complete genome 295..c.............c..31389
DQ473494.1 Human rhinovirus 74, complete genome 296..c.............c..31489
DQ473498.1 Human rhinovirus 10, complete genome 293..c.............c..31189
DQ473502.1 Human rhinovirus 76, complete genome 300....t...........c..31889
DQ473503.1 Human rhinovirus 7, complete genome 301...g............c..31989
DQ473504.1 Human rhinovirus 88, complete genome 304...g............c..32289
DQ473505.1 Human rhinovirus 36, complete genome 300...g............c..31889
DQ473509.1 Human rhinovirus A, complete genome 304......c.........c..32289
EF173414.1 Human rhinovirus 11, complete genome 299....t...........c..31789
EF173414.1 Human rhinovirus 11, complete genome 1725____..c.t........._171263
EF173415.1 Human rhinovirus 12, complete genome 298..c.............c..31689
EF173416.1 Human rhinovirus 24, complete genome 301....t...........c..31989
FJ445135.1 Human rhinovirus 50 strain ATCC VR-517, complete genome 296..c.............c..31489
FJ445141.1 Human rhinovirus 57 isolate fs ship#1-hrv-57, complete genome 296..c.............c..31489
FJ445142.1 Human rhinovirus 58 strain ATCC VR-1168, complete genome 300...g............c..31889
FJ445150.1 Human rhinovirus 68 strain ATCC VR-1178, complete genome 301..g.............c..31989
FJ445157.1 Human rhinovirus 81 strain ATCC VR-1191, complete genome 299..g.............c..31789
FJ445158.1 Human rhinovirus 81 isolate F06, complete genome 299..g.............c..31789
FJ445159.1 Human rhinovirus 81 isolate F07, complete genome 299..g.............c..31789
FJ445165.1 Human rhinovirus 89 isolate F09, complete genome 300...g............c..31889
FJ445166.1 Human rhinovirus 89 isolate F08, complete genome 301...g............c..31989
FJ445167.1 Human rhinovirus 90 strain ATCC VR-1291, complete genome 297....t...........c..31589
FJ445176.1 Human rhinovirus 7 strain ATCC VR-1117, complete genome 302...g............c..32089
FJ445178.1 Human rhinovirus 10 strain ATCC VR-1120, complete genome 293..c.............c..31189
FJ445182.1 Human rhinovirus 76 strain ATCC VR-1186, complete genome 300....t...........c..31889
FJ445184.1 Human rhinovirus 89 strain ATCC VR-1199, complete genome 301...g............c..31989
FJ445190.1 Human rhinovirus 24 strain ATCC VR-1134, complete genome 301....t...........c..31989
NC_001617.1 Human rhinovirus 89, complete genome 301...g............c..31989
D00239.1HRVACG Human rhinovirus 1B, complete genome 303...g..........t.c..32184
AY751783.1 Human rhinovirus 39, complete genome 299..g..g..........c..31784
DQ473492.1 Human rhinovirus 73, complete genome 299...g..a.........c..31784
DQ473495.1 Human rhinovirus 38, complete genome 296..c.t...........c..31484
DQ473499.1 Human rhinovirus 44, complete genome 296..c.t...........c..31484
DQ473501.1 Human rhinovirus 34, complete genome 295..c.t...........c..31384
DQ473506.1 Human rhinovirus 46, complete genome 297..c.t...........c..31584
DQ473508.1 Human rhinovirus 28, complete genome 304...gt...........c..32284
DQ473510.1 Human rhinovirus 75, complete genome 301...g..a.........c..31984
DQ473511.1 Human rhinovirus 55, complete genome 206..c.t...........c..22484
FJ445111.1 Human rhinovirus 1 strain ATCC VR-1559, complete genome 306...g..........t.c..32484
FJ445113.1 Human rhinovirus 8 strain ATCC VR-1118, complete genome 295..c.t...........c..31384
FJ445118.1 Human rhinovirus 18 strain ATCC VR-1128, complete genome 297..c.t...........c..31584
FJ445120.1 Human rhinovirus 20 strain ATCC VR-1130, complete genome 303..g.t...........c..32184
FJ445121.1 Human rhinovirus 21 strain ATCC VR-1131, complete genome 297..c.t...........c..31584
FJ445122.1 Human rhinovirus 22 strain ATCC VR-1132, complete genome 297...g..t.........c..31584
FJ445125.1 Human rhinovirus 29 strain ATCC VR-1139, complete genome 296..c.t...........c..31484
FJ445126.1 Human rhinovirus 31 strain ATCC VR-506, complete genome 296..c.t...........c..31484
FJ445131.1 Human rhinovirus 43 strain ATCC VR-1153, complete genome 300...g..a.........c..31884
FJ445133.1 Human rhinovirus 47 strain ATCC VR-1157, complete genome 297..c.t...........c..31584
FJ445138.1 Human rhinovirus 54 strain ATCC VR-1164, complete genome 296..c.t...........c..31484
FJ445146.1 Human rhinovirus 63 strain ATCC VR-1173, complete genome 298..c.t...........c..31684
FJ445148.1 Human rhinovirus 66 strain ATCC VR-1176, complete genome 297..c.t...........c..31584
FJ445148.1 Human rhinovirus 66 strain ATCC VR-1176, complete genome 982____.........a.a.._99563
FJ445154.1 Human rhinovirus 77 strain ATCC VR-1187, complete genome 298..c.t...........c..31684
FJ445154.1 Human rhinovirus 77 strain ATCC VR-1187, complete genome 6498_____.t..........__648757
FJ445156.1 Human rhinovirus 80 strain ATCC VR-1190, complete genome 296..c.t...........c..31484
FJ445160.1 Human rhinovirus 82 strain ATCC VR-1192, complete genome 298...g..c.........c..31684
FJ445170.1 Human rhinovirus 95 strain ATCC VR-1301, complete genome 295..c.t...........c..31384
FJ445180.1 Human rhinovirus 38 strain ATCC VR-1148, complete genome 296..c.t...........c..31484
FJ445189.1 Human rhinovirus 34 strain ATCC VR-1144, complete genome 295..c.t...........c..31384
GQ415052.1 Human rhinovirus A isolate hrv-A101-v1, complete genome 308____..a............32273
DQ473500.1 Human rhinovirus 59, complete genome 300_____...........c..31368
DQ473500.1 Human rhinovirus 59, complete genome 822...........________83257
FJ445123.1 Human rhinovirus 25 strain ATCC VR-1135, complete genome 301_____...........c..31468
FJ445136.1 Human rhinovirus 51 strain ATCC VR-1161, complete genome 5884_____...........a..589768
FJ445136.1 Human rhinovirus 51 strain ATCC VR-1161, complete genome 824...........________83457
FJ445145.1 Human rhinovirus 62 strain ATCC VR-1172, complete genome 302_____...........c..31568
FJ445152.1 Human rhinovirus 71 strain ATCC VR-1181, complete genome 313_____...........c..32668
FJ445163.1 Human rhinovirus 85 strain ATCC VR-1195, complete genome 300_____...........c..31368
FJ445163.1 Human rhinovirus 85 strain ATCC VR-1195, complete genome 825...........________83557
EF582386.1 Human rhinovirus C strain 025, complete genome 300...ctg..........c..31878
EU840952.2 Human rhinovirus C strain CL-170085, complete genome 301...ctg..........c..31978
EF173417.1 Human rhinovirus 64, complete genome 298...gt.c.........c..31678
FJ445114.1 Human rhinovirus 9 isolate F01, complete genome 296..c.tg..........c..31478
FJ445115.1 Human rhinovirus 9 isolate F02, complete genome 296..c.tg..........c..31478
FJ445116.1 Human rhinovirus 13 strain ATCC VR-1123, complete genome 299...gt.a.........c..31778
FJ445117.1 Human rhinovirus 13 isolate F03, complete genome 300...gt.a.........c..31878
FJ445119.1 Human rhinovirus 19 strain ATCC VR-1129, complete genome 298...gt.c.........c..31678
FJ445127.1 Human rhinovirus 32 strain ATCC VR-1142, complete genome 295..c.tg..........c..31378
FJ445140.1 Human rhinovirus 56 strain ATCC VR-1166, complete genome 296..c.tg..........c..31478
FJ445143.1 Human rhinovirus 60 strain ATCC VR-1473, complete genome 298..c.tg..........c..31678
FJ445144.1 Human rhinovirus 61 strain ATCC VR-1171, complete genome 300...gt.a.........c..31878
FJ445149.1 Human rhinovirus 67 strain ATCC VR-1177, complete genome 296..c.tg..........c..31478
FJ445171.1 Human rhinovirus 96 strain ATCC VR-1296, complete genome 299...gt.a.........c..31778
FJ445173.1 Human rhinovirus 98 strain ATCC VR-1298, complete genome 295..c.tg..........c..31378
FJ445177.1 Human rhinovirus 9 strain ATCC VR-489, complete genome 296..c.tg..........c..31478
FJ445181.1 Human rhinovirus 64 strain ATCC VR-1174, complete genome 298...gt.c.........c..31678
EF173418.1 Human rhinovirus 78, complete genome 308____..a.........c..32268
FJ445183.1 Human rhinovirus 78 strain ATCC VR-1188, complete genome 308____..a.........c..32268
GQ415051.1 Human rhinovirus A isolate hrv-A101, complete genome 308____..a.........c..32268
GU219984.1 Human rhinovirus C strain HRV-C15 isolate W10, complete genome 299______..........c..31163
X02316.1 Human rhinovirus 2, complete sequence 301______..........c..31363
DQ473496.1 Human rhinovirus 49, complete genome 302______..........c..31463
DQ473497.1 Human rhinovirus 23, complete genome 226______..........c..23863
DQ473512.1 Human rhinovirus 30, complete genome 302______..........c..31463
FJ445134.1 Human rhinovirus 49 isolate F04, complete genome 303______..........c..31563
FJ445179.1 Human rhinovirus 30 strain ATCC VR-1140, complete genome 296______..........c..30863
L05355.1HRV14POL Human rhinovirus type 14 polyprotein gene 2240_____...........___223057
NC_001490.1 Human rhinovirus 14, complete genome 2240_____...........___223057
FJ445129.1 Human rhinovirus 40 strain ATCC VR-341, complete genome 823...........________83357
FJ445130.1 Human rhinovirus 42 strain ATCC VR-338, complete genome 2095_.........t.t..____210863
FJ445162.1 Human rhinovirus 84 strain ATCC VR-1194, complete genome 2087_.........t.a..____210063