../../tmp/servers/virsirnadb/1121713535
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi18601cctctcctcttccataggc19
NC_009334.1 Human herpesvirus 4, complete genome 170398.............c.....17038094
NC_009334.1 Human herpesvirus 4, complete genome 57596.t...........______5758463
NC_009334.1 Human herpesvirus 4, complete genome 96190..c..........______9617863
NC_009334.1 Human herpesvirus 4, complete genome 60626___..........g.c.c.6064168
NC_009334.1 Human herpesvirus 4, complete genome 98948__.t..........c.c._9893368
NC_009334.1 Human herpesvirus 4, complete genome 88299.g.........._______8828857
NC_009334.1 Human herpesvirus 4, complete genome 110504__.t.........._____11049357
NC_009334.1 Human herpesvirus 4, complete genome 13109.........cc.tcc....1312773
NC_009334.1 Human herpesvirus 4, complete genome 16179.........cc.tcc....1619773
NC_009334.1 Human herpesvirus 4, complete genome 19249.........cc.tcc....1926773
NC_009334.1 Human herpesvirus 4, complete genome 22319.........cc.tcc....2233773
NC_009334.1 Human herpesvirus 4, complete genome 25389.........cc.tcc....2540773
NC_009334.1 Human herpesvirus 4, complete genome 28459.........cc.tcc....2847773
NC_009334.1 Human herpesvirus 4, complete genome 31529.........cc.tcc....3154773
NC_009334.1 Human herpesvirus 4, complete genome 34599.........cc.tcc....3461773
NC_009334.1 Human herpesvirus 4, complete genome 59482.........._________5949152
NC_009334.1 Human herpesvirus 4, complete genome 78015_____..........____7800652
NC_009334.1 Human herpesvirus 4, complete genome 111587_____..........____11157852
NC_009334.1 Human herpesvirus 4, complete genome 139173___..........______13916452
NC_009334.1 Human herpesvirus 4, complete genome 148189.........._________14818052
NC_009334.1 Human herpesvirus 4, complete genome 36501_..gg.a.........a._3651768
NC_009334.1 Human herpesvirus 4, complete genome 73039___.a.a.........___7305157
NC_009334.1 Human herpesvirus 4, complete genome 94513.........ac..______9452557
NC_009334.1 Human herpesvirus 4, complete genome 104867______.c.c.........10487957
NC_009334.1 Human herpesvirus 4, complete genome 116343__.........g.g.____11635557
NC_009334.1 Human herpesvirus 4, complete genome 60822_.a........._______6081252
NC_009334.1 Human herpesvirus 4, complete genome 170127__.........t.______17011752
NC_009334.1 Human herpesvirus 4, complete genome 2828.........__________282047
NC_009334.1 Human herpesvirus 4, complete genome 14791___........._______1478347
NC_009334.1 Human herpesvirus 4, complete genome 17861___........._______1785347
NC_009334.1 Human herpesvirus 4, complete genome 20931___........._______2092347
NC_009334.1 Human herpesvirus 4, complete genome 24001___........._______2399347
NC_009334.1 Human herpesvirus 4, complete genome 27071___........._______2706347
NC_009334.1 Human herpesvirus 4, complete genome 30141___........._______3013347
NC_009334.1 Human herpesvirus 4, complete genome 33211___........._______3320347
NC_009334.1 Human herpesvirus 4, complete genome 72737____.........______7274547
NC_009334.1 Human herpesvirus 4, complete genome 83297____.........______8328947
NC_009334.1 Human herpesvirus 4, complete genome 96629____.........______9662147
NC_009334.1 Human herpesvirus 4, complete genome 105371_________........._10537947
NC_009334.1 Human herpesvirus 4, complete genome 109477__________.........10946947
NC_009334.1 Human herpesvirus 4, complete genome 115435.........__________11544347
NC_009334.1 Human herpesvirus 4, complete genome 115656__________.........11566447
NC_009334.1 Human herpesvirus 4, complete genome 121820_........._________12181247
NC_009334.1 Human herpesvirus 4, complete genome 140876__________.........14088447
NC_009334.1 Human herpesvirus 4, complete genome 162914______.........____16290647
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 57415.t...........______5740363
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 95278..c..........______9526663
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 106297___..........._____10628757
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 60520___..........g.c.c.6053568
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 98036__.t..........c.c._9802168
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 117562.t..a........._____11754963
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 109593__.t.........._____10958257
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 13159.........cc.tcc....1317773
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 16232.........cc.tcc....1625073
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 19305.........cc.tcc....1932373
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 22378.........cc.tcc....2239673
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 25451.........cc.tcc....2546973
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 28524.........cc.tcc....2854273
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 31597.........cc.tcc....3161573
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 34670.........cc.tcc....3468873
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 59367.........._________5937652
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 77872_____..........____7786352
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 110676_____..........____11066752
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 72923___.a.a.........___7293557
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 93601.........ac..______9361357
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 103955______.c.c.........10396757
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 115435__.........g.g.____11544757
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 60716_.a........._______6070652
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 2828.........__________282047
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 14844___........._______1483647
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 17917___........._______1790947
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 20990___........._______2098247
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 24063___........._______2405547
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 27136___........._______2712847
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 30209___........._______3020147
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 33282___........._______3327447
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 72621____.........______7262947
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 95717____.........______9570947
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 104459_________........._10446747
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 108566__________.........10855847
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 114524.........__________11453247
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 114745__________.........11475347
AY961628.3 Human herpesvirus 4 strain GD1, complete genome 120912_........._________12090447