../../tmp/servers/virsirnadb/10285722
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi20431ccttgatgttagatggaga19
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 6369...................6387100
DQ473503.1 Human rhinovirus 7, complete genome 6389....a..............640794
DQ473503.1 Human rhinovirus 7, complete genome 6643__..ag.........c.t.665968
EF173415.1 Human rhinovirus 12, complete genome 6363....a..............638194
EF173415.1 Human rhinovirus 12, complete genome 5722___..........______573152
FJ445157.1 Human rhinovirus 81 strain ATCC VR-1191, complete genome 6361..c................637994
FJ445157.1 Human rhinovirus 81 strain ATCC VR-1191, complete genome 1534_____..........t.__152357
FJ445176.1 Human rhinovirus 7 strain ATCC VR-1117, complete genome 6389....a.......r......640789
FJ445176.1 Human rhinovirus 7 strain ATCC VR-1117, complete genome 6643__..ag.........c.t.665968
FJ445167.1 Human rhinovirus 90 strain ATCC VR-1291, complete genome 6363___................637884
DQ473504.1 Human rhinovirus 88, complete genome 6386.a..a..............640489
DQ473504.1 Human rhinovirus 88, complete genome 3264_________..........325552
EF173417.1 Human rhinovirus 64, complete genome 6367..g.............t..638589
FJ445181.1 Human rhinovirus 64 strain ATCC VR-1174, complete genome 6367..g.............t..638589
DQ473493.1 Human rhinovirus 15, complete genome 6380___.............t..639578
DQ473493.1 Human rhinovirus 15, complete genome 6629..c.tg.........c.t.664773
DQ473495.1 Human rhinovirus 38, complete genome 6375___.............t..639078
DQ473499.1 Human rhinovirus 44, complete genome 6362___.............g..637778
DQ473501.1 Human rhinovirus 34, complete genome 6358___.............g..637378
DQ473510.1 Human rhinovirus 75, complete genome 6379___.a..............639478
EF173419.1 Human rhinovirus 94, complete genome 6371___.............t..638678
FJ445114.1 Human rhinovirus 9 isolate F01, complete genome 6375___.............c..639078
FJ445115.1 Human rhinovirus 9 isolate F02, complete genome 6374___.............t..638978
FJ445127.1 Human rhinovirus 32 strain ATCC VR-1142, complete genome 6372___.............t..638778
FJ445133.1 Human rhinovirus 47 strain ATCC VR-1157, complete genome 6371___.............t..638678
FJ445138.1 Human rhinovirus 54 strain ATCC VR-1164, complete genome 6373___.............t..638878
FJ445139.1 Human rhinovirus 54 isolate F05, complete genome 6372___.............t..638778
FJ445141.1 Human rhinovirus 57 isolate fs ship#1-hrv-57, complete genome 6373___.a..............638878
FJ445145.1 Human rhinovirus 62 strain ATCC VR-1172, complete genome 6370___..........c.....638578
FJ445146.1 Human rhinovirus 63 strain ATCC VR-1173, complete genome 6380___.t..............639578
FJ445146.1 Human rhinovirus 63 strain ATCC VR-1173, complete genome 1809_..........._______179957
FJ445158.1 Human rhinovirus 81 isolate F06, complete genome 6364___.c..............637978
FJ445173.1 Human rhinovirus 98 strain ATCC VR-1298, complete genome 6372___.............t..638778
FJ445180.1 Human rhinovirus 38 strain ATCC VR-1148, complete genome 6375___.............t..639078
FJ445185.1 Human rhinovirus 94 strain ATCC VR-1295, complete genome 6371___.............t..638678
FJ445189.1 Human rhinovirus 34 strain ATCC VR-1144, complete genome 6358___.............g..637378
NC_009996.1 Human rhinovirus C, complete genome 6337_____..............635073
NC_009996.1 Human rhinovirus C, complete genome 6096____.........._____610552
EF173423.1 Human rhinovirus 37, complete genome 807_..........a.g...._82378
DQ473490.1 Human rhinovirus 4, complete genome 6447______.............645968
DQ473490.1 Human rhinovirus 4, complete genome 802_..........a.g..c._81873
M16248.1HRV89 Human rhinovirus type 89 (HRV89), complete genome 6398___.c...c..........641373
M16248.1HRV89 Human rhinovirus type 89 (HRV89), complete genome 5324______..g........._533557
DQ473498.1 Human rhinovirus 10, complete genome 6376___.t...c..........639173
DQ473500.1 Human rhinovirus 59, complete genome 6373___.t...........t..638873
DQ473505.1 Human rhinovirus 36, complete genome 6387___.t...........g..640273
DQ473505.1 Human rhinovirus 36, complete genome 1007______.........a.._99657
DQ473509.1 Human rhinovirus A, complete genome 6373___.c...........t..638873
DQ473509.1 Human rhinovirus A, complete genome 6622.a..ag.........c.t.664073
EF173414.1 Human rhinovirus 11, complete genome 6365___.a...........t..638073
EF173414.1 Human rhinovirus 11, complete genome 956____.........._____94752
FJ445116.1 Human rhinovirus 13 strain ATCC VR-1123, complete genome 6383___.a...........g..639873
FJ445117.1 Human rhinovirus 13 isolate F03, complete genome 6384___.a...........g..639973
FJ445120.1 Human rhinovirus 20 strain ATCC VR-1130, complete genome 6407___.t...........t..642273
FJ445128.1 Human rhinovirus 33 strain ATCC VR-330, complete genome 6372___.a...........t..638773
FJ445131.1 Human rhinovirus 43 strain ATCC VR-1153, complete genome 6375___.a...........t..639073
FJ445142.1 Human rhinovirus 58 strain ATCC VR-1168, complete genome 6386___.t...c..........640173
FJ445156.1 Human rhinovirus 80 strain ATCC VR-1190, complete genome 6383___.t...........t..639873
FJ445159.1 Human rhinovirus 81 isolate F07, complete genome 6364___.c...c..........637973
FJ445160.1 Human rhinovirus 82 strain ATCC VR-1192, complete genome 6367___.c...........t..638273
FJ445165.1 Human rhinovirus 89 isolate F09, complete genome 6396___.t...........t..641173
FJ445165.1 Human rhinovirus 89 isolate F09, complete genome 6648___..g.........____665957
FJ445166.1 Human rhinovirus 89 isolate F08, complete genome 6398___.c...........t..641373
FJ445166.1 Human rhinovirus 89 isolate F08, complete genome 1009______.........a.._99857
FJ445175.1 Human rhinovirus 100 strain ATCC VR-1300, complete genome 6379___.a...........t..639473
FJ445178.1 Human rhinovirus 10 strain ATCC VR-1120, complete genome 6376___.t...c..........639173
FJ445184.1 Human rhinovirus 89 strain ATCC VR-1199, complete genome 6398___.c...c..........641373
FJ445184.1 Human rhinovirus 89 strain ATCC VR-1199, complete genome 5324______..g........._533557
NC_001617.1 Human rhinovirus 89, complete genome 6398___.c...c..........641373
NC_001617.1 Human rhinovirus 89, complete genome 5324______..g........._533557
X02316.1 Human rhinovirus 2, complete sequence 6597....ag.........c.t.661578
DQ473496.1 Human rhinovirus 49, complete genome 6599....ag.........c.t.661778
DQ473496.1 Human rhinovirus 49, complete genome 6352_____..........____636152
DQ473512.1 Human rhinovirus 30, complete genome 6592.t...g.........c.t.661078
FJ445179.1 Human rhinovirus 30 strain ATCC VR-1140, complete genome 6586.t...g.........c.t.660478
FJ445124.1 Human rhinovirus 26 strain ATCC VR-1136, complete genome 6451______.a...........646363
FJ445162.1 Human rhinovirus 84 strain ATCC VR-1194, complete genome 6443______..........g..645563
EU840952.2 Human rhinovirus C strain CL-170085, complete genome 5703...........________569357
DQ473507.1 Human rhinovirus 53, complete genome 3694...........________368457
EF173418.1 Human rhinovirus 78, complete genome 5791_...tg.t.........__577668
FJ445183.1 Human rhinovirus 78 strain ATCC VR-1188, complete genome 5791_...tg.t.........__577668
EF186077.1 Human rhinovirus QPM polyprotein gene, complete cds 597___...at.........__58463
DQ473485.1 Human rhinovirus 3, complete genome 786___...ac.........__77363
EF173422.1 Human rhinovirus 3, complete genome 786___...ac.........__77363
DQ473506.1 Human rhinovirus 46, complete genome 2389.a..........g._____237663
FJ445113.1 Human rhinovirus 8 strain ATCC VR-1118, complete genome 6432____.........a.t.._644563
FJ445148.1 Human rhinovirus 66 strain ATCC VR-1176, complete genome 2390..........t.g._____237763
FJ445170.1 Human rhinovirus 95 strain ATCC VR-1301, complete genome 6434____.........a.t.._644763
GQ415051.1 Human rhinovirus A isolate hrv-A101, complete genome 4136___.c..........c.__414963
GQ415052.1 Human rhinovirus A isolate hrv-A101-v1, complete genome 4136___.t..........c.__414963
GU219984.1 Human rhinovirus C strain HRV-C15 isolate W10, complete genome 5705_.a..........______571657
FJ445125.1 Human rhinovirus 29 strain ATCC VR-1139, complete genome 2395..c........._______238457
EF582387.1 Human rhinovirus C strain 026, complete genome 3550.........._________354152
DQ875932.2 Human rhinovirus C strain NY-074 polyprotein gene, complete cds 3538.........._________352952
GQ323774.1 Human rhinovirus C strain QCE, complete genome 3520.........._________351152
AY751783.1 Human rhinovirus 39, complete genome 6375_____..........____638452