../../tmp/servers/virsirnadb/2007145264
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi20581ctcgacttatcgtccccat19
X04451.1 Hepatitis delta virus (HDV) RNA genome 488...................506100
X04451.1 Hepatitis delta virus (HDV) RNA genome 1099_________........._109147
M55042.1HPDAG Hepatitis D virus delta antigen (HDAg) mRNA, complete cds 488...................506100
M55042.1HPDAG Hepatitis D virus delta antigen (HDAg) mRNA, complete cds 1099_________........._109147
M21012.1HPDGEN Hepatitis delta virus RNA, complete genome 488...................506100
M21012.1HPDGEN Hepatitis delta virus RNA, complete genome 1099_________........._109147
AJ307077.1 Hepatitis delta virus complete genome, isolate W5 488...................506100
AJ307077.1 Hepatitis delta virus complete genome, isolate W5 1099_________........._109147
AY633627.1 Hepatitis delta virus isolate IR-1, complete genome 484...................502100
AY633627.1 Hepatitis delta virus isolate IR-1, complete genome 968___..g..g........._95468
AY633627.1 Hepatitis delta virus isolate IR-1, complete genome 1095_________........._108747
HM046802.1 Hepatitis delta virus isolate JN, complete genome 487...................505100
HM046802.1 Hepatitis delta virus isolate JN, complete genome 1097_________........._108947
NC_001653.2 Hepatitis delta virus, complete genome 490.................._50794
NC_001653.2 Hepatitis delta virus, complete genome 1101_________........._109347
X85253.1 Hepatitis D virus complete genome containing delta antigen ORF 487.................._50494
X85253.1 Hepatitis D virus complete genome containing delta antigen ORF 1096_________........._108847
AJ000558.1 Hepatitis D Virus complete genome 489_..................50694
AJ000558.1 Hepatitis D Virus complete genome 1098_________........._109047
AF098261.1AF098261 Hepatitis D virus from Canada, complete genome 483.................._50094
AF098261.1AF098261 Hepatitis D virus from Canada, complete genome 1093_________........._108547
AM779578.1 Hepatitis delta virus dFr2239b LHD gene for large HD antigen, genomic490.................._50794
AM779578.1 Hepatitis delta virus dFr2239b LHD gene for large HD antigen, genomic1101_________........._109347
AM779579.1 Hepatitis delta virus dFr2395 LHD gene for large HD antigen, genomic 489.................._50694
AM779579.1 Hepatitis delta virus dFr2395 LHD gene for large HD antigen, genomic 1100_________........._109247
AM779586.1 Hepatitis delta virus dTk28 LHD gene for large HD antigen, genomic RN488.................._50594
AM779586.1 Hepatitis delta virus dTk28 LHD gene for large HD antigen, genomic RN1098_________........._109047
AM779587.1 Hepatitis delta virus dTk7 LHD gene for large HD antigen, genomic RNA489.................._50694
AM779587.1 Hepatitis delta virus dTk7 LHD gene for large HD antigen, genomic RNA1100_________........._109247
AM779591.1 Hepatitis delta virus dTk5 LHD gene for large HD antigen, genomic RNA489.................._50694
AM779591.1 Hepatitis delta virus dTk5 LHD gene for large HD antigen, genomic RNA1095_________........._108747
AM779597.1 Hepatitis delta virus dTk2 LHD gene for large HD antigen, genomic RNA490.................._50794
AM779597.1 Hepatitis delta virus dTk2 LHD gene for large HD antigen, genomic RNA1101_________........._109347
AM902163.1 Hepatitis delta virus dFr2067 LHD gene for large HD antigen, genomic 490.................._50794
AM902163.1 Hepatitis delta virus dFr2067 LHD gene for large HD antigen, genomic 1101_________........._109347
AM902165.1 Hepatitis delta virus dFr2172 LHD gene for large HD antigen, genomic 489.................._50694
AM902165.1 Hepatitis delta virus dFr2172 LHD gene for large HD antigen, genomic 1100_________........._109247
AM902172.1 Hepatitis delta virus dFr2264 LHD gene for large HD antigen, genomic 491.................._50894
AM902172.1 Hepatitis delta virus dFr2264 LHD gene for large HD antigen, genomic 1102_________........._109447
AM902173.1 Hepatitis delta virus dFr2380 LHD gene for large HD antigen, genomic 486.................._50394
AM902173.1 Hepatitis delta virus dFr2380 LHD gene for large HD antigen, genomic 1088_________........._108047
AM902174.1 Hepatitis delta virus dFr2404 LHD gene for large HD antigen, genomic 486.................._50394
AM902174.1 Hepatitis delta virus dFr2404 LHD gene for large HD antigen, genomic 1088_________........._108047
AM902175.1 Hepatitis delta virus dFr2406 LHD gene for large HD antigen, genomic 487.................._50494
AM902175.1 Hepatitis delta virus dFr2406 LHD gene for large HD antigen, genomic 1101_________........._109347
AM902179.1 Hepatitis delta virus dFr2042 LHD gene for large HD antigen, genomic 490.................._50794
AM902179.1 Hepatitis delta virus dFr2042 LHD gene for large HD antigen, genomic 1099_________........._109147
L22066.1HPDAGA Hepatitis delta virus antigen gene, complete cds, and autocleav492_................._50889
L22066.1HPDAGA Hepatitis delta virus antigen gene, complete cds, and autocleav974___..g..g........._96068
L22066.1HPDAGA Hepatitis delta virus antigen gene, complete cds, and autocleav1101_________........._109347
M28267.1HPDCG Human hepatitis delta virus encoding delta-antigen RNA, complete491_................._50789
M28267.1HPDCG Human hepatitis delta virus encoding delta-antigen RNA, complete1102_________........._109447
AM779590.1 Hepatitis delta virus dTk38 LHD gene for large HD antigen, genomic RN491_................._50789
AM779590.1 Hepatitis delta virus dTk38 LHD gene for large HD antigen, genomic RN1099_________........._109147
EF514905.2 Hepatitis delta virus isolate OA, complete genome 484....g............._50189
EF514905.2 Hepatitis delta virus isolate OA, complete genome 968___..g..g........._95468
EF514905.2 Hepatitis delta virus isolate OA, complete genome 1095_________........._108747
AM779594.1 Hepatitis delta virus dTk27 LHD gene for large HD antigen, genomic RN489..............t..._50689
AM902177.1 Hepatitis delta virus dFr2012 LHD gene for large HD antigen, genomic 490.............t...._50789
EF514907.1 Hepatitis delta virus isolate ZA, complete genome 484....g..a.........._50184
EF514907.1 Hepatitis delta virus isolate ZA, complete genome 968___..g..g........._95468
EF514907.1 Hepatitis delta virus isolate ZA, complete genome 1095_________........._108747
AM902181.1 Hepatitis delta virus dFr2210 LHD gene for large HD antigen, genomic 488....r.ga.........._50578
AM902181.1 Hepatitis delta virus dFr2210 LHD gene for large HD antigen, genomic 1100_________........._109247
M84917.1HPDCIAA Hepatitis D virus RNA sequence 491....g.ga.........._50878
M84917.1HPDCIAA Hepatitis D virus RNA sequence 1098_________........._109047
M92448.1HPDHDAG Hepatitis D virus, 5' end 483....g.ga.........._50078
M92448.1HPDHDAG Hepatitis D virus, 5' end 1453______.........t.._146457
M92448.1HPDHDAG Hepatitis D virus, 5' end 1096_________........._108847
X77627.1 Hepatitis D virus genomic RNA for HDAg 483....g.ga.........._50078
X77627.1 Hepatitis D virus genomic RNA for HDAg 1094_________........._108647
U81989.1HDU81989 Hepatitis delta virus from Ethiopia genotype IC, complete gen487....g.ga.........._50478
U81989.1HDU81989 Hepatitis delta virus from Ethiopia genotype IC, complete gen972___..g..g........._95868
U81989.1HDU81989 Hepatitis delta virus from Ethiopia genotype IC, complete gen1099_________........._109147
AF104263.1 Hepatitis D virus strain TW2667, complete genome 484....g.ga.........._50178
AF104263.1 Hepatitis D virus strain TW2667, complete genome 1096_________........._108847
AF425644.1 Hepatitis D virus isolate TWD2577-66 genotype I, complete genome 483....g.ga.........._50078
AF425644.1 Hepatitis D virus isolate TWD2577-66 genotype I, complete genome 1094_________........._108647
AB118849.1 Hepatitis delta virus DNA, complete genome, strain:Nagasaki(JA-N2) 484....g.aa.........._50178
AB118849.1 Hepatitis delta virus DNA, complete genome, strain:Nagasaki(JA-N2) 1095_________........._108747
AY648956.1 Hepatitis delta virus isolate TW1435#47, complete genome 484....g.ga.........._50178
AY648956.1 Hepatitis delta virus isolate TW1435#47, complete genome 1452______.........t.._146357
AY648956.1 Hepatitis delta virus isolate TW1435#47, complete genome 1095_________........._108747
AY648957.1 Hepatitis delta virus isolate TW5132#24, complete genome 484....g.ga.........._50178
AY648957.1 Hepatitis delta virus isolate TW5132#24, complete genome 1095_________........._108747
AY648958.1 Hepatitis delta virus isolate TW1573#4, complete genome 483....g.ga.........._50078
AY648958.1 Hepatitis delta virus isolate TW1573#4, complete genome 1094_________........._108647
AY648959.1 Hepatitis delta virus isolate TW3678#25, complete genome 483....g.ga.........._50078
AY648959.1 Hepatitis delta virus isolate TW3678#25, complete genome 1094_________........._108647
AM779576.1 Hepatitis delta virus dFr2544 LHD gene for large HD antigen, genomic 483....g.ga.........._50078
AM779576.1 Hepatitis delta virus dFr2544 LHD gene for large HD antigen, genomic 967___..g..g........._95368
AM779576.1 Hepatitis delta virus dFr2544 LHD gene for large HD antigen, genomic 1094_________........._108647
AM779581.1 Hepatitis delta virus dTk1 LHD gene for large HD antigen, genomic RNA489....g.ga.........._50678
AM779581.1 Hepatitis delta virus dTk1 LHD gene for large HD antigen, genomic RNA1097_________........._108947
AM779582.1 Hepatitis delta virus dTk35 LHD gene for large HD antigen, genomic RN488....g.ga.........._50578
AM779582.1 Hepatitis delta virus dTk35 LHD gene for large HD antigen, genomic RN1099_________........._109147
AM779583.1 Hepatitis delta virus dTk10 LHD gene for large HD antigen, genomic RN489....g.ga.........._50678
AM779583.1 Hepatitis delta virus dTk10 LHD gene for large HD antigen, genomic RN1102_________........._109447
AM779584.1 Hepatitis delta virus dTk4 LHD gene for large HD antigen, genomic RNA488....g.ga.........._50578
AM779584.1 Hepatitis delta virus dTk4 LHD gene for large HD antigen, genomic RNA1100_________........._109247
AM779585.1 Hepatitis delta virus dTk6 LHD gene for large HD antigen, genomic RNA488....g.ga.........._50578
AM779585.1 Hepatitis delta virus dTk6 LHD gene for large HD antigen, genomic RNA1101_________........._109347
AM779589.1 Hepatitis delta virus dTk3 LHD gene for large HD antigen, genomic RNA486....g.ga.........._50378
AM779589.1 Hepatitis delta virus dTk3 LHD gene for large HD antigen, genomic RNA1099_________........._109147
AM779592.1 Hepatitis delta virus dTk8 LHD gene for large HD antigen, genomic RNA487....g.ga.........._50478
AM779592.1 Hepatitis delta virus dTk8 LHD gene for large HD antigen, genomic RNA968___..g..g........._95468
AM779592.1 Hepatitis delta virus dTk8 LHD gene for large HD antigen, genomic RNA1095_________........._108747
AM779595.1 Hepatitis delta virus dTk12 LHD gene for large HD antigen, genomic RN487....g.aa.........._50478
AM779595.1 Hepatitis delta virus dTk12 LHD gene for large HD antigen, genomic RN1097_________........._108947
AM779596.1 Hepatitis delta virus dTk21 LHD gene for large HD antigen, genomic RN490....g.ga.........._50778
AM779596.1 Hepatitis delta virus dTk21 LHD gene for large HD antigen, genomic RN1101_________........._109347
AM902164.1 Hepatitis delta virus dFr2137 LHD gene for large HD antigen, genomic 491....g.ga.........._50878
AM902164.1 Hepatitis delta virus dFr2137 LHD gene for large HD antigen, genomic 972___..g..g........._95868
AM902164.1 Hepatitis delta virus dFr2137 LHD gene for large HD antigen, genomic 1099_________........._109147
AM902167.1 Hepatitis delta virus dFr2201 LHD gene for large HD antigen, genomic 487....g.ga.........._50478
AM902167.1 Hepatitis delta virus dFr2201 LHD gene for large HD antigen, genomic 1095_________........._108747
AM902169.1 Hepatitis delta virus dFr2236 LHD gene for large HD antigen, genomic 487....g.ga.........._50478
AM902169.1 Hepatitis delta virus dFr2236 LHD gene for large HD antigen, genomic 1102_________........._109447
AM902170.1 Hepatitis delta virus dFr2244 LHD gene for large HD antigen, genomic 490....g.ga.........._50778
AM902171.1 Hepatitis delta virus dFr2258 LHD gene for large HD antigen, genomic 492....g.ga.........._50978
AM902171.1 Hepatitis delta virus dFr2258 LHD gene for large HD antigen, genomic 974___..g..g........._96068
AM902171.1 Hepatitis delta virus dFr2258 LHD gene for large HD antigen, genomic 1101_________........._109347
AM902178.1 Hepatitis delta virus dFr2040 LHD gene for large HD antigen, genomic 490....g.ga.........._50778
AM902178.1 Hepatitis delta virus dFr2040 LHD gene for large HD antigen, genomic 973___..gc.g........._95963
AM902178.1 Hepatitis delta virus dFr2040 LHD gene for large HD antigen, genomic 1100_________........._109247
AM902180.1 Hepatitis delta virus dFr2043 LHD gene for large HD antigen, genomic 491....g.ga.........._50878
AM902180.1 Hepatitis delta virus dFr2043 LHD gene for large HD antigen, genomic 972___..g..g........._95868
AM902180.1 Hepatitis delta virus dFr2043 LHD gene for large HD antigen, genomic 1099_________........._109147
HQ005365.1 Hepatitis delta virus isolate 7, complete genome 263....g.ga.........._28078
HQ005367.1 Hepatitis delta virus isolate 8, complete genome 263....g.ga.........._28078
HQ005367.1 Hepatitis delta virus isolate 8, complete genome 875_________........._86747
M58629.1HPDHDAGA Hepatitis delta virus large and small antigens (HDAg) gene, c485.g..c.ga...........50378
M58629.1HPDHDAGA Hepatitis delta virus large and small antigens (HDAg) gene, c970___..gc.g........._95663
M58629.1HPDHDAGA Hepatitis delta virus large and small antigens (HDAg) gene, c1097_________........._108947
AM779575.1 Hepatitis delta virus dFr2119 LHD gene for large HD antigen, genomic 481....g.ga......y..._49873
AM779577.1 Hepatitis delta virus dFr2284 LHD gene for large HD antigen, genomic 485....g.ga.........__50173
EF514903.1 Hepatitis delta virus isolate CB, complete genome 968___..g..g........._95468
EF514903.1 Hepatitis delta virus isolate CB, complete genome 1095_________........._108747
AM779580.1 Hepatitis delta virus dFr2046 LHD gene for large HD antigen, genomic 975___..g..g........._96168
AM779580.1 Hepatitis delta virus dFr2046 LHD gene for large HD antigen, genomic 493.c..g.ga.........._51073
AM779580.1 Hepatitis delta virus dFr2046 LHD gene for large HD antigen, genomic 1102_________........._109447
AM902176.1 Hepatitis delta virus dFr2411 LHD gene for large HD antigen, genomic 973___..g..g........._95968
AM779593.1 Hepatitis delta virus dTk13 LHD gene for large HD antigen, genomic RN484.c..g.ga.........._50173
AM779593.1 Hepatitis delta virus dTk13 LHD gene for large HD antigen, genomic RN1094_________........._108647
AB118848.1 Hepatitis delta virus DNA, complete genome, strain:Nagasaki(JA-N1) 494________.........._50352
AB118848.1 Hepatitis delta virus DNA, complete genome, strain:Nagasaki(JA-N1) 1098_________........._109047
U81988.1HDU81988 Hepatitis delta virus from Somalia genotype IC, complete geno1094_________........._108647
AB037947.1 Hepatitis D virus genomic RNA, complete genome, isolate:VnzD8375 1095_________........._108747
AB037948.1 Hepatitis D virus genomic RNA, complete genome, isolate:VnzD8349 1096_________........._108847
AB037949.1 Hepatitis D virus genomic RNA, complete genome, isolate:VnzD8624 1097_________........._108947
AB118847.1 Hepatitis delta virus DNA, complete genome, strain:Tokyo(JA-T) 1102_________........._109447
AJ584847.1 Hepatitis D virus mRNA for Large HD antigen (LHD gene), strain dFr-481107_________........._109947
AY648952.1 Hepatitis delta virus isolate TWD62#16, complete genome 1102_________........._109447
AY648953.1 Hepatitis delta virus isolate 2621#56, complete genome 1102_________........._109447
AY648954.1 Hepatitis delta virus isolate TW1025#14, complete genome 1102_________........._109447
AY648955.1 Hepatitis delta virus isolate TW3038#25, complete genome 1102_________........._109447
EF514904.1 Hepatitis delta virus isolate NK, complete genome 1095_________........._108747
EF514906.1 Hepatitis delta virus isolate SO, complete genome 1095_________........._108747
AM902166.1 Hepatitis delta virus dFr2189 LHD gene for large HD antigen, genomic 496_________........._50447
AM902166.1 Hepatitis delta virus dFr2189 LHD gene for large HD antigen, genomic 1096_________........._108847
AM902168.1 Hepatitis delta virus dFr2045 LHD gene for large HD antigen, genomic 490________.........__49847
AM902168.1 Hepatitis delta virus dFr2045 LHD gene for large HD antigen, genomic 1093_________........._108547
HQ005364.1 Hepatitis delta virus isolate 5, complete genome 875_________........._86747