../../tmp/servers/virsirnadb/1960580462
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi17741gaaattggctcgaattgtt19
U22522.1ETU22522 Human enterovirus 71 polyprotein gene, complete cds 7306...................7324100
AF119795.2 Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds 7303...................7321100
AF136379.1 Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds 7305...................7323100
AF119796.3 Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds 7303...................7321100
AF176044.1 Enterovirus 71 polyprotein gene, complete cds 7306...................7324100
AF304457.1 Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds 7305...................7323100
AF304458.1 Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds 7305...................7323100
AF304459.1 Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds 7305...................7323100
AF316321.2 Enterovirus 5865/sin/000009, complete genome 7306...................7324100
AF352027.1 Enterovirus 5666/sin/002209, complete genome 7306...................7324100
AY421767.1 Human coxsackievirus A10 strain Kowalik, complete genome 7304...................7322100
AJ586873.1 Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89 7306...................7324100
DQ060149.1 Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome 7305...................7323100
DQ341357.1 Human enterovirus 71 isolate 7F-AUS-6-99, complete genome 7304...................7322100
DQ341358.1 Human enterovirus 71 isolate S40221-SAR-00, complete genome 7304...................7322100
DQ341359.1 Human enterovirus 71 isolate S10862-SAR-98, complete genome 7304...................7322100
DQ341365.1 Human enterovirus 71 isolate PP37-MAL-01, complete genome 7306...................7324100
DQ341366.1 Human enterovirus 71 isolate SB2864-SAR-00, complete genome 7306...................7324100
DQ381846.1 Human enterovirus 71 strain 6F/AUS/6/99, complete genome 7304...................7322100
AM396584.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P7303...................7321100
AM396585.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P7303...................7321100
AM396587.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P7306...................7324100
EF063152.1 Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd7304...................7322100
EF373575.1 Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet7308...................7326100
EU414334.1 Human enterovirus 71 strain PLday4-CH-06, complete genome 7303...................7321100
EU414335.1 Human enterovirus 71 strain PLday1-CH-06, complete genome 7303...................7321100
AB482183.1 Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya 7307...................7325100
HQ189392.1 Human enterovirus 71 isolate HUN/1978, complete genome 7307...................7325100
AB550332.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org 7304...................7322100
AB550333.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 7304...................7322100
AB550336.1 Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o7307...................7325100
AB550337.1 Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L7307...................7325100
AB550340.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org7304...................7322100
AB550341.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS7304...................7322100
AB575913.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1197232...................7250100
AB575914.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1707241...................7259100
AB575918.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2057243...................7261100
AB575923.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2027249...................7267100
AB575935.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 4807248...................7266100
AB575936.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9617243...................7261100
AB575939.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3657235...................7253100
AY421760.1 Human coxsackievirus A2 strain Fleetwood, complete genome 7293.g.................731194
AY421761.1 Human coxsackievirus A3 strain Olson, complete genome 7290................a..730894
AY421768.1 Human coxsackievirus A12 strain Texas-12, complete genome 7299................a..731794
DQ341355.1 Human enterovirus 71 isolate 06-KOR-00, complete genome 7304................a..732294
DQ341356.1 Human enterovirus 71 isolate 03-KOR-00, complete genome 7304................a..732294
DQ341360.1 Human enterovirus 71 isolate J115-MAL-01, complete genome 7303..........t........732194
DQ341361.1 Human enterovirus 71 isolate 1M-AUS-12-00, complete genome 7304..........t........732294
DQ341362.1 Human enterovirus 71 isolate SB12736-SAR-03, complete genome 7307................a..732594
DQ341363.1 Human enterovirus 71 isolate S19841-SAR-03, complete genome 7307................a..732594
DQ341364.1 Human enterovirus 71 isolate 5511-SIN-00, complete genome 7307................a..732594
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 7305................a..732394
FJ172159.1 Human enterovirus 71 isolate NUH0075/SIN/08, complete genome 7265.g.................728394
FJ461781.1 Human enterovirus 71 isolate NUH0083/SIN/08, complete genome 7271................a..728994
FJ606450.1 Human enterovirus 71 strain BJ08-Z025-5, complete genome 7302.t.................732094
FJ607337.1 Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co7301.t.................731994
AB575915.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9447252..............c....727094
AB575916.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1617243..............c....726194
AB575927.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1137242................a..726094
AB575928.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1157243................a..726194
AB575937.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1417216..........t........723494
AB575938.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1007277..........t........729594
AB575941.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2487243.g.................726194
AB575942.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3697238.g.................725694
AB575948.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1017261.g.................727994
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 7305................a..732394
HQ423142.1 Human enterovirus 71 strain KMM/09, complete genome 7302.c.................732094
HQ423143.1 Human enterovirus 71 strain KM186/09, complete genome 7302.c.................732094
U22521.1ETU22521 Human enterovirus 71 polyprotein gene, complete cds 7303.............g..a..732189
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 7305.g..............a..732389
AY421763.1 Human coxsackievirus A5 strain Swartz, complete genome 7295.g..............a..731389
AY421764.1 Human coxsackievirus A6 strain Gdula, complete genome 7329..............c.a..734789
AY421765.1 Human coxsackievirus A7 strain Parker, complete genome 7299..........t.....a..731789
AY421766.1 Human coxsackievirus A8 strain Donovan, complete genome 7291..............c.a..730989
AY421769.1 Human coxsackievirus A14 strain G-14, complete genome 7312.t..............a..733089
AY773285.1 Human enterovirus 90 isolate F950027, complete genome 7308..........t...c....732689
AY697460.1 Human enterovirus 90 polyprotein gene, complete cds 7309..........t...c....732789
AY697461.1 Human enterovirus 91 polyprotein gene, complete cds 7311..........t...c....732989
AB204852.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR7303.............g..a..732189
AB204853.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts7303.............g..a..732189
EU131776.1 Human enterovirus 71 strain N3340-TW-02, complete genome 7302.c..............a..732089
EU812514.1 Human coxsackievirus A16 strain FY18 from China, complete genome 7311.c..............a..732989
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 7305.............g..a..732389
FJ360545.1 Human enterovirus 71 isolate GZ-08-02, complete genome 7302.c..............a..732089
FJ439769.1 Human enterovirus 71 strain Fuyang-0805, complete genome 7302.c..............a..732089
FJ606448.1 Human enterovirus 71 strain BJ08-Z011-4, complete genome 7302.c..............a..732089
GQ994989.1 Human enterovirus 71 strain Chongqing1-09-China, complete genome 7303.c...........g.....732189
GU434678.1 Human enterovirus 71 strain EV71-Hubei-09-China, complete genome 7303.............g..a..732189
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 7305..........t.....a..732389
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 7305.............g..a..732389
HQ407557.1 Human enterovirus 71 strain LN009, complete genome 7302.c..............a..732089
HQ325852.1 Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome 7303.c..............a..732189
AB575917.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1017258..........t...c....727689
HQ891925.1 Human enterovirus 71 strain Shanghai 36-2009, complete genome 7304.c..............a..732289
HQ891926.1 Human enterovirus 71 strain Shanghai 51-2009, complete genome 7304.c..............a..732289
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 7306.............g..a..732489
HQ456306.1 Human enterovirus A strain GZ2010-134, complete genome 7302.c..............a..732089
HQ456307.1 Human enterovirus A strain GZ2010-120, complete genome 7302.c..............a..732089
HQ456308.1 Human enterovirus A strain GZ2010-118, complete genome 7302.c..............a..732089
HQ456313.1 Human enterovirus A strain GZ2010-95, complete genome 7302.c..............a..732089
AF302996.1 Enterovirus 71 strain SHZH98 polyprotein gene, complete cds 7303.c...........g..a..732184
AY465356.1 Human enterovirus 71 strain SHZH03, complete genome 7302.c...........g..a..732084
AY421762.1 Human coxsackievirus A4 strain High Point, complete genome 7331.c............c.a..734984
AY697459.1 Human enterovirus 89 polyprotein gene, complete cds 7313..........t...c.a..733184
DQ133458.1 Human enterovirus 71 strain 984 polyprotein gene, complete cds 7302.t...........g..a..732084
DQ133459.1 Human enterovirus 71 strain 1235 polyprotein gene, complete cds 7302.c...........g..a..732084
DQ341354.1 Human enterovirus 71 isolate 3799-SIN-98, complete genome 7307.c............c.a..732584
DQ341367.1 Human enterovirus 71 isolate MY821-3-SAR-97, complete genome 7306.c............c.a..732484
DQ341368.1 Human enterovirus 71 isolate MY104-9-SAR-97, complete genome 7306.c............c.a..732484
AM396586.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/7306.c............c.a..732484
AM396588.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/7297.c............c.a..731584
EF373576.1 Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet7302.c...........g..a..732084
EU364841.1 Human enterovirus 71 strain 26M/AUS/4/99, complete genome 7307.c............c.a..732584
EU376004.1 Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome 7307.c............c.a..732584
EU376005.1 Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome 7307.c............c.a..732584
EU703812.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete7302.c...........g..a..732084
EU703813.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete7302.c...........g..a..732084
EU703814.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete7302.c...........g..a..732084
EU812515.1 Human enterovirus 71 strain FY23 from China, complete genome 7305.c...........g..a..732384
EU864507.1 Human enterovirus 71 isolate EV71/Zhejiang08, complete genome 7303.c...........g..a..732184
FJ158600.1 Human enterovirus 71 isolate DTID/ZJU-62, complete genome 7302.c...........g..a..732084
FJ158601.1 Human enterovirus 71 isolate DTID/ZJU-74, complete genome 7302.c...........g..a..732084
FJ194964.1 Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome 7302.c...........g..a..732084
FJ194965.1 Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome 7302.c...........g..a..732084
AB469182.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E7305.c............c.a..732384
AB469183.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: EV718040.c............c.a..805884
FJ360544.1 Human enterovirus 71 isolate GZ-08-01, complete genome 7301.c...........g..a..731984
FJ606447.1 Human enterovirus 71 strain BJ08-Z004-3, complete genome 7302.t...........g..a..732084
FJ606449.1 Human enterovirus 71 strain BJ08-Z020-1, complete genome 7302.c...........g..a..732084
FJ713137.1 Human enterovirus 71 strain Shanghai 036-2009, complete genome 7304.c...........g..a..732284
FJ607334.1 Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g7301.c...........g..a..731984
FJ607335.1 Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g7301.c...........g..a..731984
FJ607336.1 Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete 7300.c..c...........a..731884
FJ607338.1 Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c7301.c...........g..a..731984
GQ892830.1 Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome 7302.c...........g..a..732084
GQ994988.1 Human enterovirus 71 strain Anhui1-09-China, complete genome 7302.c...........g..a..732084
GQ994990.1 Human enterovirus 71 strain Chongqing2-09-China, complete genome 7302.c...........g..a..732084
GQ994991.1 Human enterovirus 71 strain Chongqing3-09-China, complete genome 7302.c...........g..a..732084
GQ994992.1 Human enterovirus 71 strain Henan2-09-China, complete genome 7294.c...........g..a..731284
GU196833.1 Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet7114.c...........g..a..713284
GU366191.1 Human enterovirus 71 strain Henan10-08-China, complete genome 7302.c...........g..a..732084
GU396280.1 Human enterovirus 71 isolate EV71/Lanzhou01, complete genome 7302.c...........g..a..732084
GU459070.1 Human enterovirus 71 isolate FY23-K12, complete genome 7305.c...........g..a..732384
GU459071.1 Human enterovirus 71 isolate FY23-K14, complete genome 7302.c...........g..a..732084
HM003207.1 Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome 7302.c...........g..a..732084
GQ279369.1 Human enterovirus 71 strain SZ/HK08-5, complete genome 7302.t...........g..a..732084
GQ279370.1 Human enterovirus 71 strain SZ/HK08-6, complete genome 7302.c...........g..a..732084
HM002484.1 Human enterovirus 71 strain BJ67, complete genome 7302.c...........g..a..732084
HM002485.1 Human enterovirus 71 strain BJ97, complete genome 7302.c...........g..a..732084
HM002486.1 Human enterovirus 71 strain BJ110, complete genome 7303.c...........g..a..732184
HM002487.1 Human enterovirus 71 strain BJ303, complete genome 7303.c...........g..a..732184
HM002488.1 Human enterovirus 71 strain BJ366, complete genome 7302.c...........g..a..732084
HM002489.1 Human enterovirus 71 strain BJ398, complete genome 7303.c...........g..a..732184
HM053669.1 Human enterovirus 71 strain BJ293, complete genome 7302.c...........g..a..732084
HM053670.1 Human enterovirus 71 strain BJ393, complete genome 7302.c...........g..a..732084
AB550334.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o7305.c............c.a..732384
AB550335.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L7305.c............c.a..732384
AB550338.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat7301.c...........g..a..731984
AB550339.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat7301.c...........g..a..731984
HQ188292.1 Human enterovirus 71 strain Fuyang-0805a, complete genome 7305.c...........g..a..732384
HQ426649.1 Human enterovirus 71 strain 2010FJLY008, complete genome 7300.c............c.a..731884
HQ891923.1 Human enterovirus 71 strain Shanghai 27-2009, complete genome 7303.c...........g..a..732184
HQ891924.1 Human enterovirus 71 strain Shanghai 28-2009, complete genome 7303.c...........g..a..732184
HQ891927.1 Human enterovirus 71 strain Shanghai 64-2009, complete genome 7303.c...........g..a..732184
HQ891928.1 Human enterovirus 71 strain Shanghai 117-2009, complete genome 7303.c...........g..a..732184
HQ891929.1 Human enterovirus 71 strain Shanghai 118-2009, complete genome 7303.c...........g..a..732184
HQ400942.1 Human enterovirus 71 HZ08/Hangzhou/2008, complete genome 7302.c...........g..a..732084
HQ456305.1 Human enterovirus A strain GZ2010-156, complete genome 7302.c...........g..a..732084
HQ456309.1 Human enterovirus A strain GZ08-831, complete genome 7302.c...........g..a..732084
HQ456310.1 Human enterovirus A strain GZ08-530, complete genome 7302.c...........g..a..732084
HQ456311.1 Human enterovirus A strain GZ08-522, complete genome 7302.c...........g..a..732084
HQ456312.1 Human enterovirus A strain GZ08-520, complete genome 7302.c...........g..a..732084
HQ611148.1 Human enterovirus 71 strain AH08/06, complete genome 7302.c...........g..a..732084
JN001860.1 Human enterovirus 71 strain NB/2010/01, complete genome 7303.c...........g..a..732184
AY697458.1 Human enterovirus 76 polyprotein gene, complete cds 7322.r..c.....y...c....734078
AY560657.1 Human poliovirus 1 strain Brunhilde, complete genome 7354..cg.........c.c...737278
AF039205.1 Coxsackievirus B6 strain Schmitt, complete genome 7322_.....tta........._730673
AF162711.1 Echovirus 30 strain Bastianni, complete genome 4084__.........a..aa...410073
AF105342.1 Coxsackievirus B6 strain Schmitt, complete genome 7322_.....tta........._730673
AF114384.1 Coxsackievirus B6 strain Schmitt, complete genome 7321_.....tta........._730573
AF311938.1 Human echovirus 30 strain Bastianni, complete genome 4089__.........a..aa...410573
AF448782.1 Human poliovirus 2 strain EGY88-074, complete genome 7353____.........c.c...736768
AF499637.1 Human coxsackievirus A13 strain Flores, complete genome 7372____.........c.c...738668
AF465511.1 Human coxsackievirus A13 strain Flores, complete genome 7372____.........c.c...738668
AF111966.2 Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome 7358____.........c..a..737268
AB205396.1 Human coxsackievirus A18 genomic RNA, complete genome, strain: CAM1977374____.........c.c...738868
AF328683.1 Human coxsackievirus B4 polyprotein-like gene, complete sequence 1421____..t.t..........140768
AY302540.1 Human echovirus 14 strain Tow complete genome 7374..........t..______738663
EF174468.1 Human coxsackievirus B2 isolate KOR 04-243, complete genome 6078_..........t.._____606663
AY843297.1 Human enterovirus 79 strain USA/CA79-10384, complete genome 7356__...........______736657
EF634316.1 Human echovirus 11 strain D207, complete genome 7359__...........______736957