../../tmp/servers/virsirnadb/581433391
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi21591gaactaccattcaaggtct19
M88483.1CXAB3CG Coxsackievirus B3 mRNA, complete genome 2614...................2632100
U57056.1CXU57056 Coxsackievirus B3 Woodruff variant, complete genome 2614...................2632100
AY752946.1 Human coxsackievirus B3 strain 20, complete genome 2614...................2632100
M33854.1CXA3CG Coxsackievirus B3 (CVB3) complete genome 2613.................._263094
M16572.1CXA3G Coxsackievirus B3, complete genome 2612.................._262994
AF231763.1 Coxsackievirus B3 strain 31-1-93, complete genome 2614.................._263194
AF231764.1 Coxsackievirus B3 strain P, complete genome 2614.................._263194
AF231765.1 Coxsackievirus B3 strain PD, complete genome 2614.................._263194
AY752945.1 Human coxsackievirus B3 strain 0, complete genome 2614.................._263194
FJ357838.1 Human coxsackievirus B3 strain GZ803, complete genome 2617_..................263494
AY752944.2 Human coxsackievirus B3 strain 28, complete genome 2614.................._263194
AF085363.1 Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds 2618_................._263489
AF081485.1 Coxsackievirus B2 strain Ohio, complete genome 2618_................._263489
AY302542.1 Human echovirus 16 strain Harrington complete genome 2615_................._263189
D16364.1SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd2609...t.............._262689
D16364.1SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd2833___.c...g........._284768
AF268065.1 Swine vesicular disease virus strain NET/1/92, complete genome 2609.........c........_262689
AJ493062.2 Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF4962612_.....t............262989
EU887278.1 Swine vesicular disease virus SVDV01, complete genome 2609...t.............._262689
EU887278.1 Swine vesicular disease virus SVDV01, complete genome 2833___.c...g........._284768
X80059.1 Echo Virus 11 genomic DNA 2620............c..a...263889
X54521.1 Swine vesicular disease virus complete genomic RNA 2608...t...........a.._262584
D00435.1SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl2609...t..t..........._262684
AF039205.1 Coxsackievirus B6 strain Schmitt, complete genome 2609.............c.c.._262684
AF105342.1 Coxsackievirus B6 strain Schmitt, complete genome 2609.............c.c.._262684
AF114384.1 Coxsackievirus B6 strain Schmitt, complete genome 2608.............c.c.._262584
AY186745.1 Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds 2594...t...........a.._261184
AY186746.1 Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds 2594...t...........a.._261184
AY186747.1 Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds2594...t...........a.._261184
AY186748.1 Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds2594...t...........a.._261184
AY843302.1 Human enterovirus 77 strain USA/TX97-10394, complete genome 2618.........c..c....._263584
EU887279.1 Swine vesicular disease virus SVDV02, complete genome 2609...t..t..........._262684
EU887280.1 Swine vesicular disease virus SVDV03, complete genome 2609...t...........a.._262684
AB426610.1 Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 2598.........c.....a.._261584
FJ000001.1 Human coxsackievirus B3 strain Fuyang19, complete genome 2614_..t...........a...263184
GQ141875.1 Human coxsackievirus B3 strain Beijing0811, complete genome 2616_..t...........a...263384
X84981.1 Echovirus 9 (strain Hill), complete genome 2608...t.........c.c...262684
AY896762.1 Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein 2594...t..t..c.........261284
X67706.1 Coxsackievirus B5 complete genome 2831_.t.............c._284778
AY875692.1 Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome 2833_.t.............c._284978
AY036578.1 Human echovirus 7 strain UMMC polyprotein gene, complete cds 2608_...........cc.a...262578
EF667344.1 Human enterovirus 92 strain RJG7, complete genome 3387___..c...........__337468
D00625.1POL2CG1 Human poliovirus 2 genomic RNA, complete genome 5490_..........a.g..___550468
M12197.1POL2LAN Poliovirus type 2 (Lansing strain), complete genome 5490_..........a.g..___550468
AY238473.1 Human poliovirus 2 strain MEF-1 polyprotein gene, complete cds 5490_..........a.g..___550468
AF499637.1 Human coxsackievirus A13 strain Flores, complete genome 3457...........t.______346963
AF465511.1 Human coxsackievirus A13 strain Flores, complete genome 3457...........t.______346963
AY697460.1 Human enterovirus 90 polyprotein gene, complete cds 4145______..........c..413363
AY697461.1 Human enterovirus 91 polyprotein gene, complete cds 4147______..........c..413563
AF136379.1 Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds 3104________...........309457
AF119796.3 Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds 3102________...........309257
AF176044.1 Enterovirus 71 polyprotein gene, complete cds 3105________...........309557
AF304457.1 Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds 3104________...........309457
AF304458.1 Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds 3104________...........309457
AF304459.1 Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds 3104________...........309457
DQ060149.1 Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome 3104________...........309457
DQ341354.1 Human enterovirus 71 isolate 3799-SIN-98, complete genome 3106________...........309657
DQ341357.1 Human enterovirus 71 isolate 7F-AUS-6-99, complete genome 3103________...........309357
DQ341358.1 Human enterovirus 71 isolate S40221-SAR-00, complete genome 3103________...........309357
DQ341359.1 Human enterovirus 71 isolate S10862-SAR-98, complete genome 3103________...........309357
DQ341360.1 Human enterovirus 71 isolate J115-MAL-01, complete genome 3102________...........309257
DQ341367.1 Human enterovirus 71 isolate MY821-3-SAR-97, complete genome 3105________...........309557
DQ341368.1 Human enterovirus 71 isolate MY104-9-SAR-97, complete genome 3105________...........309557
DQ381846.1 Human enterovirus 71 strain 6F/AUS/6/99, complete genome 3103________...........309357
DQ452074.1 Human enterovirus 71 strain 804/NO/03, complete genome 3104________...........309457
AM396584.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P3102________...........309257
AM396585.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P3102________...........309257
AM396586.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/3105________...........309557
AM396588.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/3096________...........308657
EF063152.1 Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd3103________...........309357
EU364841.1 Human enterovirus 71 strain 26M/AUS/4/99, complete genome 3106________...........309657
EU376004.1 Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome 3106________...........309657
EU376005.1 Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome 3106________...........309657
FJ172159.1 Human enterovirus 71 isolate NUH0075/SIN/08, complete genome 3064________...........305457
AB469182.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E3104________...........309457
AB469183.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: EV713839________...........382957
AB550332.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org 3103________...........309357
AB550333.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 3103________...........309357
AB550334.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o3104________...........309457
AB550335.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L3104________...........309457
AB550340.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org3103________...........309357
AB550341.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS3103________...........309357
AB575935.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 4803047________...........303757
AB575936.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9613042________...........303257
AB575937.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1413015________...........300557
AB575939.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3653034________...........302457
AB575941.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2483042________...........303257
AB575942.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3693037________...........302757
AB575948.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1013060________...........305057