../../tmp/servers/virsirnadb/1645623764
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12821gaagggatggtattggaaa19
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 1177...................1195100
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 1178_..................119594
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 1178_..................119594
DQ341360.1 Human enterovirus 71 isolate J115-MAL-01, complete genome 1176_..................119394
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 1178_..................119594
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 1178_..................119594
AB550340.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org1177_..................119494
AB550341.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS1177_..................119494
AB575935.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 4801121_..................113894
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 1178_..................119594
EU812514.1 Human coxsackievirus A16 strain FY18 from China, complete genome 1183............c......120194
AY421766.1 Human coxsackievirus A8 strain Donovan, complete genome 1176_................._119289
FJ461781.1 Human enterovirus 71 isolate NUH0083/SIN/08, complete genome 1144_................._116089
FJ606447.1 Human enterovirus 71 strain BJ08-Z004-3, complete genome 1175_................._119189
HM002488.1 Human enterovirus 71 strain BJ366, complete genome 1175_................._119189
HQ407557.1 Human enterovirus 71 strain LN009, complete genome 1175_................._119189
HQ426649.1 Human enterovirus 71 strain 2010FJLY008, complete genome 1173_................._118989
AY421765.1 Human coxsackievirus A7 strain Parker, complete genome 1175_.....g............119289
AY421768.1 Human coxsackievirus A12 strain Texas-12, complete genome 1178_.....t............119589
AY697458.1 Human enterovirus 76 polyprotein gene, complete cds 1189_...........c......120689
AY697458.1 Human enterovirus 76 polyprotein gene, complete cds 2635_______..........._262557
AB192877.1 Human enterovirus 90 genomic RNA, complete genome 1182_..a...............119989
DQ341355.1 Human enterovirus 71 isolate 06-KOR-00, complete genome 1177_...........c......119489
DQ341356.1 Human enterovirus 71 isolate 03-KOR-00, complete genome 1177_...........c......119489
DQ341358.1 Human enterovirus 71 isolate S40221-SAR-00, complete genome 1177_.....g............119489
DQ341359.1 Human enterovirus 71 isolate S10862-SAR-98, complete genome 1177_.....g............119489
DQ341361.1 Human enterovirus 71 isolate 1M-AUS-12-00, complete genome 1177_...........c......119489
EF063152.1 Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd1177_..a...............119489
EF373575.1 Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet1181_.....g............119889
EF667343.1 Simian enterovirus 46 strain RNM5, complete genome 1163_...........c......118089
GQ279369.1 Human enterovirus 71 strain SZ/HK08-5, complete genome 1175_...........c......119289
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 1178_.....t............119589
AB575936.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9611116_..a...............113389
AB575937.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1411089_...........c......110689
AB575938.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1001150_...........c......116789
AY421761.1 Human coxsackievirus A3 strain Olson, complete genome 1174...a..g............119289
AF302996.1 Enterovirus 71 strain SHZH98 polyprotein gene, complete cds 1176_...........c....._119284
AF316321.2 Enterovirus 5865/sin/000009, complete genome 1179_.....g..........._119584
AF352027.1 Enterovirus 5666/sin/002209, complete genome 1179_.....g..........._119584
AY465356.1 Human enterovirus 71 strain SHZH03, complete genome 1175_...........c....._119184
AY421763.1 Human coxsackievirus A5 strain Swartz, complete genome 1174_.....g..........._119084
AJ586873.1 Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89 1179_.....g..........._119584
AY773285.1 Human enterovirus 90 isolate F950027, complete genome 1181_..a.............._119784
DQ133458.1 Human enterovirus 71 strain 984 polyprotein gene, complete cds 1175_...........c....._119184
DQ341354.1 Human enterovirus 71 isolate 3799-SIN-98, complete genome 1180_.....g..........._119684
DQ341362.1 Human enterovirus 71 isolate SB12736-SAR-03, complete genome 1180_.....g..........._119684
DQ341363.1 Human enterovirus 71 isolate S19841-SAR-03, complete genome 1180_.....g..........._119684
DQ341364.1 Human enterovirus 71 isolate 5511-SIN-00, complete genome 1180_.....g..........._119684
DQ341365.1 Human enterovirus 71 isolate PP37-MAL-01, complete genome 1179_.....g..........._119584
DQ341366.1 Human enterovirus 71 isolate SB2864-SAR-00, complete genome 1179_.....g..........._119584
DQ341367.1 Human enterovirus 71 isolate MY821-3-SAR-97, complete genome 1179_.....g..........._119584
DQ341368.1 Human enterovirus 71 isolate MY104-9-SAR-97, complete genome 1179_.....g..........._119584
DQ452074.1 Human enterovirus 71 strain 804/NO/03, complete genome 1178_...........c....._119484
AM396586.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/1179_.....g..........._119584
AM396587.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P1179_.....g..........._119584
AM396588.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/1170_.....g..........._118684
EF373576.1 Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet1175_...........c....._119184
EU131776.1 Human enterovirus 71 strain N3340-TW-02, complete genome 1175_...........c....._119184
EU364841.1 Human enterovirus 71 strain 26M/AUS/4/99, complete genome 1180_.....g..........._119684
EU376004.1 Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome 1180_.....g..........._119684
EU376005.1 Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome 1180_.....g..........._119684
EU703812.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete1175_...........c....._119184
EU703813.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete1175_...........c....._119184
EU703814.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete1175_...........c....._119184
EU864507.1 Human enterovirus 71 isolate EV71/Zhejiang08, complete genome 1176_...........c....._119284
FJ158600.1 Human enterovirus 71 isolate DTID/ZJU-62, complete genome 1175_...........c....._119184
FJ158601.1 Human enterovirus 71 isolate DTID/ZJU-74, complete genome 1175_...........c....._119184
FJ194964.1 Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome 1175_...........c....._119184
FJ194965.1 Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome 1175_...........c....._119184
AB469182.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E1178_.....g..........._119484
AB469183.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: EV711913_.....g..........._192984
FJ360544.1 Human enterovirus 71 isolate GZ-08-01, complete genome 1174_...........c....._119084
FJ360546.1 Human enterovirus 71 isolate GZ-08-03, complete genome 1174_...........c....._119084
FJ439769.1 Human enterovirus 71 strain Fuyang-0805, complete genome 1175_...........c....._119184
FJ606448.1 Human enterovirus 71 strain BJ08-Z011-4, complete genome 1175_...........c....._119184
FJ606449.1 Human enterovirus 71 strain BJ08-Z020-1, complete genome 1175_...........c....._119184
FJ607334.1 Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g1174_...........c....._119084
FJ607335.1 Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g1174_...........c....._119084
FJ607338.1 Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c1174_...........c....._119084
GQ892830.1 Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome 1175_...........c....._119184
GQ994988.1 Human enterovirus 71 strain Anhui1-09-China, complete genome 1175_...........c....._119184
GQ994990.1 Human enterovirus 71 strain Chongqing2-09-China, complete genome 1175_...........c....._119184
GQ994991.1 Human enterovirus 71 strain Chongqing3-09-China, complete genome 1175_...........c....._119184
GQ994992.1 Human enterovirus 71 strain Henan2-09-China, complete genome 1167_...........c....._118384
GU196833.1 Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet987_...........c....._100384
GU366191.1 Human enterovirus 71 strain Henan10-08-China, complete genome 1175_...........c....._119184
GU396280.1 Human enterovirus 71 isolate EV71/Lanzhou01, complete genome 1175_...........c....._119184
GU459070.1 Human enterovirus 71 isolate FY23-K12, complete genome 1178_...........c....._119484
GU459071.1 Human enterovirus 71 isolate FY23-K14, complete genome 1175_...........c....._119184
HM003207.1 Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome 1175_...........c....._119184
GQ279370.1 Human enterovirus 71 strain SZ/HK08-6, complete genome 1175_...........c....._119184
HM002484.1 Human enterovirus 71 strain BJ67, complete genome 1175_.....g..........._119184
HM002489.1 Human enterovirus 71 strain BJ398, complete genome 1176_...........c....._119284
HM053669.1 Human enterovirus 71 strain BJ293, complete genome 1175_...........c....._119184
HM053670.1 Human enterovirus 71 strain BJ393, complete genome 1175_...........c....._119184
AB550334.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o1178_.....g..........._119484
AB550335.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L1178_.....g..........._119484
AB550336.1 Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o1180_.....g..........._119684
AB550337.1 Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L1180_.....g..........._119684
AB550338.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat1174_...........c....._119084
AB550339.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat1174_...........c....._119084
HQ188292.1 Human enterovirus 71 strain Fuyang-0805a, complete genome 1178_...........c....._119484
HQ325852.1 Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome 1176_...........c....._119284
HQ891923.1 Human enterovirus 71 strain Shanghai 27-2009, complete genome 1176_...........c....._119284
HQ891924.1 Human enterovirus 71 strain Shanghai 28-2009, complete genome 1176_...........c....._119284
HQ891925.1 Human enterovirus 71 strain Shanghai 36-2009, complete genome 1177_...........c....._119384
HQ891926.1 Human enterovirus 71 strain Shanghai 51-2009, complete genome 1177_...........c....._119384
HQ891927.1 Human enterovirus 71 strain Shanghai 64-2009, complete genome 1176_...........c....._119284
HQ891928.1 Human enterovirus 71 strain Shanghai 117-2009, complete genome 1176_...........c....._119284
HQ891929.1 Human enterovirus 71 strain Shanghai 118-2009, complete genome 1176_...........c....._119284
HQ400942.1 Human enterovirus 71 HZ08/Hangzhou/2008, complete genome 1175_...........c....._119184
HQ423142.1 Human enterovirus 71 strain KMM/09, complete genome 1175_...........c....._119184
HQ423143.1 Human enterovirus 71 strain KM186/09, complete genome 1175_...........c....._119184
HQ456305.1 Human enterovirus A strain GZ2010-156, complete genome 1175_...........c....._119184
HQ456306.1 Human enterovirus A strain GZ2010-134, complete genome 1175_...........c....._119184
HQ456307.1 Human enterovirus A strain GZ2010-120, complete genome 1175_...........c....._119184
HQ456308.1 Human enterovirus A strain GZ2010-118, complete genome 1175_...........c....._119184
HQ456309.1 Human enterovirus A strain GZ08-831, complete genome 1175_...........c....._119184
HQ456310.1 Human enterovirus A strain GZ08-530, complete genome 1175_...........c....._119184
HQ456311.1 Human enterovirus A strain GZ08-522, complete genome 1175_...........c....._119184
HQ456312.1 Human enterovirus A strain GZ08-520, complete genome 1175_...........c....._119184
HQ611148.1 Human enterovirus 71 strain AH08/06, complete genome 1175_...........c....._119184
JN001860.1 Human enterovirus 71 strain NB/2010/01, complete genome 1176_...........c....._119284
AF499642.1 Human coxsackievirus A20 strain IH35, complete genome 1177_..........gg......119484
AF465514.1 Human coxsackievirus A20 strain IH Pool 35, complete genome 1177_..........gg......119484
FJ914252.2 Human poliovirus 3 strain SWI10947, complete genome 1179_..........gg......119684
AY421762.1 Human coxsackievirus A4 strain High Point, complete genome 1180_..a..t............119784
AY697460.1 Human enterovirus 90 polyprotein gene, complete cds 1182_..a..g............119984
EF667344.1 Human enterovirus 92 strain RJG7, complete genome 1135_..a..t............115284
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 1179_..a..t............119684
AY421767.1 Human coxsackievirus A10 strain Kowalik, complete genome 1180____.............._119373
AF499640.1 Human coxsackievirus A18 strain G13, complete genome 1177_..........gg....._119378
AF465513.1 Human coxsackievirus A18 strain G-13, complete genome 1177_..........gg....._119378
DQ358078.1 Human coxsackievirus A20 serotype CAV20a, complete genome 1182_..........gg....._119878
AY843298.1 Human enterovirus 80 strain USA/CA67-10387, complete genome 1177__.........gg......119378
AY421760.1 Human coxsackievirus A2 strain Fleetwood, complete genome 1175_..a..t..........._119178
EU812515.1 Human enterovirus 71 strain FY23 from China, complete genome 1178_...........cc...._119478
HM053671.1 Human enterovirus 71 strain BJ462, complete genome 1175_...........c.a..._119178
AY697459.1 Human enterovirus 89 polyprotein gene, complete cds 1183____..t............119773
AY278551.1 Human poliovirus 2 isolate P2S/Mog66-4 (21043), complete genome 6735_____............g.674868
AF499641.1 Human coxsackievirus A19 strain 8663, complete genome 3106_____..........a.._309463
AY560657.1 Human poliovirus 1 strain Brunhilde, complete genome 6741______...........g.675363
S76772.1 polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive5145...........________515557
AF230973.1AF230973 Enterovirus Yanbian 96-83csf, complete genome 5148...........________515857
AF311939.1 Human coxsackievirus B4 strain E2 variant, complete genome 5145...........________515557
AY302542.1 Human echovirus 16 strain Harrington complete genome 5182...........________519257
AY302546.1 Human echovirus 20 strain JV-1 complete genome 5143...........________515357
EF371880.2 Human enterovirus B isolate SE-03-78616, complete genome 3063__...........______307357
FJ000001.1 Human coxsackievirus B3 strain Fuyang19, complete genome 5148...........________515857
GQ141875.1 Human coxsackievirus B3 strain Beijing0811, complete genome 5150...........________516057
AB501329.1 Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-25159...........________516957
AB501330.1 Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-25159...........________516957
AB501331.1 Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)-5159...........________516957
AB501332.1 Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)-5159...........________516957
HM185055.1 Human echovirus 6 strain Echo6/Henan/116/2008, complete genome 5168...........________517857
HM185056.1 Human enterovirus B strain EVB/Henan/127/2008, complete genome 5145...........________515557