../../tmp/servers/virsirnadb/1336158655
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12801gcaggaagcagctaacata19
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 1028_..................104594
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 1028_..................104594
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 1028_..................104594
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 1028_..................104594
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 1028_..................104594
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 2421__..c..a.g.........243773
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 1027...a...............104594
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 1027...a...............104594
EF667343.1 Simian enterovirus 46 strain RNM5, complete genome 1012.........t........_102989
EU864507.1 Human enterovirus 71 isolate EV71/Zhejiang08, complete genome 1025.........g........_104289
FJ194965.1 Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome 1024.........g........_104189
FJ607334.1 Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g1023.........g........_104089
FJ607335.1 Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g1023.........g........_104089
FJ607336.1 Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete 1022...a.............._103989
GQ994988.1 Human enterovirus 71 strain Anhui1-09-China, complete genome 1024...a.............._104189
GQ994989.1 Human enterovirus 71 strain Chongqing1-09-China, complete genome 1025...a.............._104289
GQ994991.1 Human enterovirus 71 strain Chongqing3-09-China, complete genome 1024...a.............._104189
HM003207.1 Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome 1024...a.............._104189
GQ279370.1 Human enterovirus 71 strain SZ/HK08-6, complete genome 1024.........g........_104189
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 1029_.....g............104689
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 2422__..c..a.g.........243873
HQ611148.1 Human enterovirus 71 strain AH08/06, complete genome 1024...a.............._104189
DQ341362.1 Human enterovirus 71 isolate SB12736-SAR-03, complete genome 1030_...........a....._104684
AF499637.1 Human coxsackievirus A13 strain Flores, complete genome 1028_...............___104278
AF465511.1 Human coxsackievirus A13 strain Flores, complete genome 1028_...............___104278
AY421764.1 Human coxsackievirus A6 strain Gdula, complete genome 1028_..a.....t.........104584
AB575911.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100963.........g..a....._98084
AB575912.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108977.........g..a....._99484
AJ132960.1 Human poliovirus 1, complete genome. Isolated from faeces of immunode1026_..............____103973
U22522.1ETU22522 Human enterovirus 71 polyprotein gene, complete cds 1029_...........a..t.._104578
AB482183.1 Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya 1030_...........a..t.._104678
HQ189392.1 Human enterovirus 71 isolate HUN/1978, complete genome 1030_...........a..t.._104678
AB575913.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 119955_...........a..t.._97178
AB575914.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 170964_...........a..t.._98078
AB575915.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944975_...........a..t.._99178
AB575916.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161966_...........a..t.._98278
AB575917.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101981_...........a..t.._99778
AB575918.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205966_...........a..t.._98278
AB575923.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202972_...........g..t.._98878
AF111981.2 Human poliovirus 1 isolate CHN-Fujian/93-8, complete genome 1029_...........a...___104373
AY875692.1 Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome 1399___....a.........._141373
AF499636.1 Human coxsackievirus A11 strain Belgium-1, complete genome 1029_...........c..____104268
AF499638.1 Human coxsackievirus A15 strain G9, complete genome 1017_...........g..____103068
AF465512.1 Human coxsackievirus A15 strain G-9, complete genome 1017_...........g..____103068
AF111953.2 Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome 1029_...........a..____104268
AF111961.2 Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome 1029_...........a..____104268
AF111966.2 Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome 1029_...........a..____104268
AF111983.3 Human poliovirus 1 isolate CHN-Henan/91-3, complete genome 1029_...........a..____104268
EF555644.1 Human enterovirus 99, complete genome 1028_...........g..____104168
AY302543.1 Human echovirus 17 strain CHHE-29 complete genome 2161...........gc..____217568
X67706.1 Coxsackievirus B5 complete genome 4193____..........c..__420563
AY302539.1 Human echovirus 13 strain Del Carmen complete genome 4201____..........c..__421363