../../tmp/servers/virsirnadb/937656142
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12561gcagtgtggtttagagctt19
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 6666_..................668394
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 6666_..................668394
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 6666_..................668394
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 6666_..................668394
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 6666_..................668394
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 6667_..................668494
AY421761.1 Human coxsackievirus A3 strain Olson, complete genome 6651_.t................666889
AY421765.1 Human coxsackievirus A7 strain Parker, complete genome 6660_.t................667789
AB482183.1 Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya 6668_.g................668589
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 6666_....a.............668389
HQ189392.1 Human enterovirus 71 isolate HUN/1978, complete genome 6668_.g................668589
AB575913.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1196593_.g................661089
AB575914.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1706602_.g................661989
AB575915.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9446613_.g................663089
AB575916.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1616604_.g................662189
AB575918.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2056604_.g................662189
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 6666_....a.............668389
AY421768.1 Human coxsackievirus A12 strain Texas-12, complete genome 6660_.t..............._667684
AY421768.1 Human coxsackievirus A12 strain Texas-12, complete genome 6748__...........ttc...673273
AB575911.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1006602_.t..............._661884
AB575912.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1086616_.t..............._663284
AB575917.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1016619_.g..............._663584
AY421763.1 Human coxsackievirus A5 strain Swartz, complete genome 6656_..........c.....c.667384
HM003207.1 Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome 6663_..........c.....a.668084
AB575935.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 4806609_.............g..g.662684
AB575936.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9616604_.............g..g.662184
HQ423143.1 Human enterovirus 71 strain KM186/09, complete genome 6663_....t...........g.668084
EF063152.1 Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd6665_.g..............__668078
EU812514.1 Human coxsackievirus A16 strain FY18 from China, complete genome 6672_....c...........__668778
FJ172159.1 Human enterovirus 71 isolate NUH0075/SIN/08, complete genome 6626_..........c.....__664178
FJ606450.1 Human enterovirus 71 strain BJ08-Z025-5, complete genome 6663_....t...........__667878
FJ607337.1 Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co6662_....t...........__667778
AB575941.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2486604_..........c.....__661978
AB575942.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3696599_..........c.....__661478
AB575948.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1016622_..........c.....__663778
HQ423142.1 Human enterovirus 71 strain KMM/09, complete genome 6663_....t...........__667878
AY421764.1 Human coxsackievirus A6 strain Gdula, complete genome 6690_.t..a............_670678
AY697459.1 Human enterovirus 89 polyprotein gene, complete cds 6679______.............669168
DQ341358.1 Human enterovirus 71 isolate S40221-SAR-00, complete genome 6665_..........c..g..g.668278
DQ341359.1 Human enterovirus 71 isolate S10862-SAR-98, complete genome 6665_..........c..g..g.668278
DQ341360.1 Human enterovirus 71 isolate J115-MAL-01, complete genome 6664_..........c..g..g.668178
DQ341361.1 Human enterovirus 71 isolate 1M-AUS-12-00, complete genome 6665_..........c..g..g.668278
DQ452074.1 Human enterovirus 71 strain 804/NO/03, complete genome 6666_..........c..g..g.668378
EF667343.1 Simian enterovirus 46 strain RNM5, complete genome 6633_...ca...........a.665078
EF667344.1 Human enterovirus 92 strain RJG7, complete genome 6617_...ca...........a.663478
EU414334.1 Human enterovirus 71 strain PLday4-CH-06, complete genome 6664_..........c..g..g.668178
EU414335.1 Human enterovirus 71 strain PLday1-CH-06, complete genome 6664_..........c..g..g.668178
FJ828519.1 Human enterovirus 71 isolate BJ08, complete genome 6642_.t..c...........a.665978
AB550340.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org6665_..........c..g..g.668278
AB550341.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS6665_..........c..g..g.668278
AB575937.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1416577_..........c..g..g.659478
AB575938.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1006638_..........c..g..g.665578
AB575938.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1001550______...........__154057
AF119795.2 Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds 6664_..........c..g..__667973
AF136379.1 Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds 6666_..........c..g..__668173
AF119796.3 Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds 6664_..........c..g..__667973
AF176044.1 Enterovirus 71 polyprotein gene, complete cds 6667_..........c..g..__668273
AF304457.1 Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds 6666_..........c..g..__668173
AF304458.1 Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds 6666_..........c..g..__668173
AF304459.1 Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds 6666_..........c..g..__668173
AY421769.1 Human coxsackievirus A14 strain G-14, complete genome 6673_.t..t...........__668873
DQ060149.1 Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome 6666_..........c..g..__668173
DQ341355.1 Human enterovirus 71 isolate 06-KOR-00, complete genome 6665_..........c..g..__668073
DQ341356.1 Human enterovirus 71 isolate 03-KOR-00, complete genome 6665_..........c..g..__668073
DQ341357.1 Human enterovirus 71 isolate 7F-AUS-6-99, complete genome 6665_..........c..g..__668073
DQ381846.1 Human enterovirus 71 strain 6F/AUS/6/99, complete genome 6665_..........c..g..__668073
AM396584.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P6664_..........c..g..__667973
AM396585.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P6664_..........c..g..__667973
AB550332.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org 6665_..........c..g..__668073
AB550333.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 6665_..........c..g..__668073
AB575939.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3656596_..........c..g..__661173
AY843298.1 Human enterovirus 80 strain USA/CA67-10387, complete genome 3093____..c..........._308068
X54521.1 Swine vesicular disease virus complete genomic RNA 6639_............______665063
D16364.1SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd6640_............______665163
D00435.1SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl6640_............______665163
AF268065.1 Swine vesicular disease virus strain NET/1/92, complete genome 6640_............______665163
AY429470.1 Swine vesicular disease virus strain HK'70, complete genome 6640_............______665163
EU887278.1 Swine vesicular disease virus SVDV01, complete genome 6640_............______665163
EU887279.1 Swine vesicular disease virus SVDV02, complete genome 6640_............______665163
EU887280.1 Swine vesicular disease virus SVDV03, complete genome 6640_............______665163
EU887281.1 Swine vesicular disease virus SVDV04, complete genome 6640_............______665163
EU887282.1 Swine vesicular disease virus SVDV, complete genome 6640_............______665163
AY843302.1 Human enterovirus 77 strain USA/TX97-10394, complete genome 5819..........ggt.t....583778
M33854.1CXA3CG Coxsackievirus B3 (CVB3) complete genome 5797_.........gg..t..._581373
M16572.1CXA3G Coxsackievirus B3, complete genome 5796_.........gg..t..._581273
M88483.1CXAB3CG Coxsackievirus B3 mRNA, complete genome 5798_.........gg..t..._581473
X84981.1 Echovirus 9 (strain Hill), complete genome 5819_.........gg..t..._583573
AF083069.1 Echovirus 5, complete genome 5831_.........gg..t..._584773
AF114383.1 Coxsackievirus B5 strain Faulkner, complete genome 5798_.........gg..t..._581473
AF231763.1 Coxsackievirus B3 strain 31-1-93, complete genome 5798_.........gg..t..._581473
AF231764.1 Coxsackievirus B3 strain P, complete genome 5798_.........gg..t..._581473
AF231765.1 Coxsackievirus B3 strain PD, complete genome 5798_.........gg..t..._581473
AF317694.1 Human echovirus 18 strain Metcalf polyprotein gene, complete cds 5808_.........gg..t..._582473
AF317694.1 Human echovirus 18 strain Metcalf polyprotein gene, complete cds 1212____...tc..........119868
AY302546.1 Human echovirus 20 strain JV-1 complete genome 5792_.........gg..t..._580873
AY302556.1 Human echovirus 33 strain Toluca-3 complete genome 5792_.........gg..t..._580873
AY302560.1 Enterovirus 69 strain Toluca-1 complete genome 5809_.........gg..t..._582573
AY752945.1 Human coxsackievirus B3 strain 0, complete genome 5798_.........gg..t..._581473
AY752946.1 Human coxsackievirus B3 strain 20, complete genome 5798_.........gg..t..._581473
AY752944.2 Human coxsackievirus B3 strain 28, complete genome 5798_.........gg..t..._581473
U22522.1ETU22522 Human enterovirus 71 polyprotein gene, complete cds 6755__...........ttc...673973
AB575923.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2026698__...........ttc...668273
AB575927.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1136691__...........ttc...667573
AB575928.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1156692__...........ttc...667673
AF499643.1 Human coxsackievirus A22 strain Chulman, complete genome 640____...t.........g.65468
AY843299.1 Human enterovirus 81 strain USA/CA68-10389, complete genome 3241___..........a..t._322768
FJ000001.1 Human coxsackievirus B3 strain Fuyang19, complete genome 2784___..t..a........._279868
X04468.1 Poliovirus type 3 strain 23127 complete genome 2932______...........a.292063
FJ914252.2 Human poliovirus 3 strain SWI10947, complete genome 2932______...........a.292063
S76772.1 polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive6635_..........._______664557
AF311939.1 Human coxsackievirus B4 strain E2 variant, complete genome 6635_..........._______664557
AJ577589.1 Human echovirus 11, isolate HUN-1108, complete virion genome 6671_..........._______668157
AJ577590.1 Human echovirus 11, isolate FIN-0666, complete virion genome 6671_..........._______668157
AY875692.1 Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome 6642_..........._______665257
AY843303.1 Human enterovirus 85 strain BAN00-10353, complete genome 6660_..........._______667057
AY843306.1 Human enterovirus 88 strain BAN01-10398, complete genome 6671_..........._______668157
AY843308.1 Human enterovirus 101 strain CIV03-10361, complete genome 6684_..........._______669457
AJ849942.1 Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/6666_..........._______667657
DQ902712.1 Human enterovirus 84 isolate CIV2003-10603, complete genome 6662_..........._______667257
AB426610.1 Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 6665_..........._______667557