../../tmp/servers/virsirnadb/138964446
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12621ggaagagaaaggagtgtct19
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 4696...................4714100
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 4696...................4714100
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 4696...................4714100
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 4696...................4714100
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 4696...................4714100
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 4696...................4714100
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 3776____..ac...........379068
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 4697...................4715100
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 3777____..ac...........379168
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 4696...................4714100
AY421765.1 Human coxsackievirus A7 strain Parker, complete genome 4690.................._470794
AY421768.1 Human coxsackievirus A12 strain Texas-12, complete genome 4691_................._470789
AY421768.1 Human coxsackievirus A12 strain Texas-12, complete genome 1215_____............t.122868
AY421768.1 Human coxsackievirus A12 strain Texas-12, complete genome 3770____...c.........._378368
DQ341354.1 Human enterovirus 71 isolate 3799-SIN-98, complete genome 4699_..............t...471689
DQ341367.1 Human enterovirus 71 isolate MY821-3-SAR-97, complete genome 4698_..............t...471589
DQ341368.1 Human enterovirus 71 isolate MY104-9-SAR-97, complete genome 4698_..............t...471589
AM396586.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/4698_..............t...471589
AM396588.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/4689_..............t...470689
EU364841.1 Human enterovirus 71 strain 26M/AUS/4/99, complete genome 4699_..............t...471689
EU376004.1 Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome 4699_..............t...471689
EU376005.1 Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome 4699_..............t...471689
AB469182.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E4697_..............t...471489
AB469183.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: EV715432_..............t...544989
AB550334.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o4697_..............t...471489
AB550335.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L4697_..............t...471489
AB575911.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1004633_..............t...465089
AB575912.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1084647_..............t...466489
U22521.1ETU22521 Human enterovirus 71 polyprotein gene, complete cds 4695_..g.............._471184
AB204852.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR4695_..g.............._471184
AB204853.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts4695_..g.............._471184
GU434678.1 Human enterovirus 71 strain EV71-Hubei-09-China, complete genome 4695_..g.............._471184
DQ341359.1 Human enterovirus 71 isolate S10862-SAR-98, complete genome 4695...g...........c.._471284
AB575948.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1014652.........g.....c.._466984
AY843301.1 Human enterovirus 83 strain USA/CA76-10392, complete genome 2414_____..............240173
M33854.1CXA3CG Coxsackievirus B3 (CVB3) complete genome 2432_...at............_241678
M33854.1CXA3CG Coxsackievirus B3 (CVB3) complete genome 4660_..........._______467057
M16572.1CXA3G Coxsackievirus B3, complete genome 2431_...at............_241578
M16572.1CXA3G Coxsackievirus B3, complete genome 4659_..........._______466957
M88483.1CXAB3CG Coxsackievirus B3 mRNA, complete genome 2433_...at............_241778
M88483.1CXAB3CG Coxsackievirus B3 mRNA, complete genome 4661_..........._______467157
AF231764.1 Coxsackievirus B3 strain P, complete genome 2433_...at............_241778
AF231764.1 Coxsackievirus B3 strain P, complete genome 4661_..........._______467157
AY752945.1 Human coxsackievirus B3 strain 0, complete genome 2433_...at............_241778
AY752945.1 Human coxsackievirus B3 strain 0, complete genome 4661_..........._______467157
AY752946.1 Human coxsackievirus B3 strain 20, complete genome 2433_...at............_241778
AY752946.1 Human coxsackievirus B3 strain 20, complete genome 4661_..........._______467157
FJ357838.1 Human coxsackievirus B3 strain GZ803, complete genome 4662.............a.t.__467878
GU109481.1 Human coxsackievirus B3 strain SSM-CVB3, complete genome 4657.............a.t.__467378
AY752944.2 Human coxsackievirus B3 strain 28, complete genome 2433_...at............_241778
AY752944.2 Human coxsackievirus B3 strain 28, complete genome 4661_..........._______467157
AY421761.1 Human coxsackievirus A3 strain Olson, complete genome 4682_..g..a..........._469878
AY421761.1 Human coxsackievirus A3 strain Olson, complete genome 3761____...c.g.........377568
AY421766.1 Human coxsackievirus A8 strain Donovan, complete genome 4683_..g...........t.._469978
AY421769.1 Human coxsackievirus A14 strain G-14, complete genome 3783____...c...........379773
AF302996.1 Enterovirus 71 strain SHZH98 polyprotein gene, complete cds 5100_............._____511268
AF524867.1 Human echovirus 9 isolate DM, complete genome 4715_............a.____472868
AY697461.1 Human enterovirus 91 polyprotein gene, complete cds 4184___..........t...__419768
X00596.1 Poliovirus type 3 mRNA (vaccine strain Sabin 3 (Leon 12a1b)) 4734............_______474563
X00925.1 Poliovirus type 3 leon 12 a1b sequence (P3/Leon 12 a1b) 4732............_______474363
K01392.1POL3L37 Poliovirus P3/Leon/37 (type 3), complete genome 4732............_______474363
AY184221.1 Human poliovirus 3 strain Sabin 3, complete genome 4732............_______474363
AF448783.1 Human poliovirus 2 strain EGY93-034, complete genome 4742............_______475363
AF499642.1 Human coxsackievirus A20 strain IH35, complete genome 4737............_______474863
AF499643.1 Human coxsackievirus A22 strain Chulman, complete genome 4702............_______471363
AY948201.1 Human poliovirus 2 isolate CHN1025 polyprotein gene, complete cds 4741............_______475263
HM107832.1 Human poliovirus 2 isolate CHN1054, complete genome 4740............_______475163
X80059.1 Echo Virus 11 genomic DNA 4699............_______471063
X84981.1 Echovirus 9 (strain Hill), complete genome 4681............_______469263
X92886.1 Echovirus 9 (strain Barty), complete genome 2422_______............241163
U57056.1CXU57056 Coxsackievirus B3 Woodruff variant, complete genome 4660............_______467163
U57056.1CXU57056 Coxsackievirus B3 Woodruff variant, complete genome 2433_...ata..........._241773
AF085363.1 Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds 4666............_______467763
AF081485.1 Coxsackievirus B2 strain Ohio, complete genome 4666............_______467763
AF317694.1 Human echovirus 18 strain Metcalf polyprotein gene, complete cds 4670............_______468163
AF524866.1 Human echovirus 9 strain Barty, complete genome 2424_______............241363
AY302541.1 Human echovirus 15 strain CH 96-51 complete genome 4697............_______470863
AY302546.1 Human echovirus 20 strain JV-1 complete genome 4654............_______466563
AY302547.1 Human echovirus 21 strain Farina complete genome 4686............_______469763
AY302548.1 Human echovirus 24 strain DeCamp complete genome 4693............_______470463
AY302556.1 Human echovirus 33 strain Toluca-3 complete genome 4654............_______466563
AY302560.1 Enterovirus 69 strain Toluca-1 complete genome 4671............_______468263
AY875692.1 Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome 4663............_______467463
AY843297.1 Human enterovirus 79 strain USA/CA79-10384, complete genome 4690............_______470163
AY843299.1 Human enterovirus 81 strain USA/CA68-10389, complete genome 4675............_______468663
AY843300.1 Human enterovirus 82 strain USA/CA64-10390, complete genome 4693............_______470463
AY843300.1 Human enterovirus 82 strain USA/CA64-10390, complete genome 5178__...........______518857
AF538843.1 Human poliovirus 1 isolate TCDC01-861, complete genome 4733...g.........a.c.__474973
EF682343.1 Human poliovirus 1 strain USA10774 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682344.1 Human poliovirus 1 strain USA10775 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682345.1 Human poliovirus 1 strain USA10773 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682346.1 Human poliovirus 1 strain USA10780 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682347.1 Human poliovirus 1 strain USA10781 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682348.1 Human poliovirus 1 strain USA10782 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682349.1 Human poliovirus 1 strain USA10771 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682350.1 Human poliovirus 1 strain USA10772 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682351.1 Human poliovirus 1 strain USA10778 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682352.1 Human poliovirus 1 strain USA10770 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682353.1 Human poliovirus 1 strain USA10777 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682354.1 Human poliovirus 1 strain USA10779 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682355.1 Human poliovirus 1 strain USA10776 polyprotein gene, complete cds 4715...g.........a.c.__473173
EF682356.1 Human poliovirus 1 strain USA10784, complete genome 4741...g.........a.c.__475773
EF682357.1 Human poliovirus 1 strain USA10785, complete genome 4741...g.........a.c.__475773
EF682358.1 Human poliovirus 1 strain USA10783, complete genome 4741...g.........a.c.__475773
EF682359.1 Human poliovirus 1 strain USA10786, complete genome 4741...g.........a.c.__475773
AF231765.1 Coxsackievirus B3 strain PD, complete genome 2433_...at.........a.._241773
AF231765.1 Coxsackievirus B3 strain PD, complete genome 4661_..........._______467157
AY843303.1 Human enterovirus 85 strain BAN00-10353, complete genome 6350__...tt..........a.636673
FJ172447.1 Human echovirus 4 strain AUS250G, complete genome 6324__...ct..........a.634073
HM775882.1 Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome 4689.........g...a.t.__470573
V01148.1 Genome of human poliovirus type 1 (Mahoney strain). (One of two versi4736...g.........a.____475068
V01150.1 Human poliovirus strain Sabin 1 complete genome, strain Sabin 1 4741...g.........a.____475568
AY184219.1 Human poliovirus 1 strain Sabin 1, complete genome 4741...g.........a.____475568
AF538840.1 Human poliovirus 1 isolate TCDCE01-135, complete genome 4711...g.........a.____472568
AF538841.1 Human poliovirus 1 isolate TCDC01-113, complete genome 4741...g.........a.____475568
AF538842.1 Human poliovirus 1 isolate TCDC01-330, complete genome 4733...g.........a.____474768
AY928383.1 Human poliovirus 1 isolate d261-2002037607 polyprotein gene, complete4733...g.........a.____474768
AY928384.1 Human poliovirus 1 isolate d224-2002037606 polyprotein gene, complete4733...g.........a.____474768
AY928385.1 Human poliovirus 1 isolate d054-2002037604 polyprotein gene, complete4733...g.........a.____474768
AY928386.1 Human poliovirus 1 isolate d179-2002037605 polyprotein gene, complete4733...g.........a.____474768
AY928387.1 Human poliovirus 1 isolate d018-2002037602 polyprotein gene, complete4733...g.........a.____474768
EU794953.1 Human poliovirus 1 isolate A21 polyprotein gene, complete cds 4693...g.........a.____470768
EU794954.1 Human poliovirus 1 isolate A49 polyprotein gene, complete cds 4693...g.........a.____470768
EU794955.1 Human poliovirus 1 isolate A63 polyprotein gene, complete cds 4693...g.........a.____470768
EU794956.1 Human poliovirus 1 isolate A84 polyprotein gene, complete cds 4693...g.........a.____470768
EU794957.1 Human poliovirus 1 isolate A88 polyprotein gene, complete cds 4693...g.........a.____470768
EU794958.1 Human poliovirus 1 isolate A91 polyprotein gene, complete cds 4693...g.........a.____470768
EU794960.1 Human poliovirus 1 isolate A105 polyprotein gene, complete cds 4693...g.........a.____470768
EU794961.1 Human poliovirus 1 isolate A118 polyprotein gene, complete cds 4693...g.........a.____470768
EU794962.1 Human poliovirus 1 isolate A199 polyprotein gene, complete cds 4693...g.........a.____470768
EU794963.1 Human poliovirus 1 isolate A449 polyprotein gene, complete cds 4693...g.........a.____470768
FJ769378.1 Human poliovirus 1 strain CHN8184/GZ/CHN/2004, complete genome 4741...g.........a.____475568
FJ769379.1 Human poliovirus 1 strain CHN8229-1/GZ/CHN/2004, complete genome 4741...g.........a.____475568
FJ769380.1 Human poliovirus 1 strain CHN8229-2/GZ/CHN/2004, complete genome 4741...g.........a.____475568
FJ769381.1 Human poliovirus 1 strain CHN8229-3/GZ/CHN/2004, complete genome 4741...g.........a.____475568
FJ769382.1 Human poliovirus 1 strain CHN8233c/GZ/CHN/2004, complete genome 4741...g.........a.____475568
FJ769383.1 Human poliovirus 1 strain CHN8225c/GZ/CHN/2004, complete genome 4741...g.........a.____475568
FJ769384.1 Human poliovirus 1 strain CHN8248c/GZ/CHN/2004, complete genome 4741...g.........a.____475568
FJ769385.1 Human poliovirus 1 strain CHN8264c/GZ/CHN/2004, complete genome 4741...g.........a.____475568
FJ859062.1 Human poliovirus 1 isolate 10094c, complete genome 4741...g.........a.____475568
FJ859064.1 Human poliovirus 1 isolate 10097c, complete genome 4741...g.........a.____475568
DQ902712.1 Human enterovirus 84 isolate CIV2003-10603, complete genome 4683.........g...a.____469768
AY421762.1 Human coxsackievirus A4 strain High Point, complete genome 3802____...c.g.........381668
AY421767.1 Human coxsackievirus A10 strain Kowalik, complete genome 3775____..ac...........378968
EU812514.1 Human coxsackievirus A16 strain FY18 from China, complete genome 3782____..ac...........379668
AB426610.1 Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 2097_...........t._____208563
AB426610.1 Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 2167__...........______217757
X04468.1 Poliovirus type 3 strain 23127 complete genome 4737_..........._______474757
X00595.1 Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab)) 4741_..........._______475157
AF462418.1 Human poliovirus 1 99/056-252-14, complete genome 4742_..........._______475257
AF462419.1 Human poliovirus 1 RUS-1161-96-001, complete genome 4742_..........._______475257
AY184220.1 Human poliovirus 2 strain Sabin 2, complete genome 4741_..........._______475157
AF541919.1 Human poliovirus 3 isolate PV3/NOR/01/8 polyprotein mRNA, complete cd4723_..........._______473357
AY177685.1 Human poliovirus 2, complete genome 4741_..........._______475157
AY278549.1 Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome 4741_..........._______475157
AY278550.1 Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome 4741_..........._______475157
AY278552.1 Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome 4741_..........._______475157
AF499636.1 Human coxsackievirus A11 strain Belgium-1, complete genome 4755_..........._______476557
AF499641.1 Human coxsackievirus A19 strain 8663, complete genome 4706_..........._______471657
AF465514.1 Human coxsackievirus A20 strain IH Pool 35, complete genome 4738_..........._______474857
AJ544513.1 Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050 4741_..........._______475157
DQ205099.1 Human poliovirus 2 clone S2R9, complete genome 4741_..........._______475157
DQ890385.1 Human poliovirus 2 strain NIE0210766, complete genome 4741_..........._______475157
DQ890386.1 Human poliovirus 2 strain NIE0110767, complete genome 4743_..........._______475357
DQ890387.1 Human poliovirus 2 strain USA9810768, complete genome 4741_..........._______475157
EF456707.1 Human poliovirus 3 isolate K/2002 polyprotein gene, complete cds 4693_..........._______470357
FJ898290.1 Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl4741_..........._______475157
HM107833.1 Human poliovirus 2 isolate CHN1078, complete genome 4741_..........._______475157
HM107834.1 Human poliovirus 2 isolate CHN3219, complete genome 4741_..........._______475157
HM107835.1 Human poliovirus 2 isolate CHN8316, complete genome 4741_..........._______475157
AF231763.1 Coxsackievirus B3 strain 31-1-93, complete genome 4661_..........._______467157
AY186745.1 Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds 4632_..........._______464257
AY186746.1 Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds 4632_..........._______464257
AY186747.1 Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds4632_..........._______464257
AY186748.1 Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds4632_..........._______464257
AJ493062.2 Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF4962165__...........______217557
AY302549.1 Human echovirus 25 strain JV-4 complete genome 4687_..........._______469757
AY302550.1 Human echovirus 26 strain Coronel complete genome 5168__...........______517857
AY302552.1 Human echovirus 29 strain JV-10 complete genome 4688_..........._______469857
AJ577589.1 Human echovirus 11, isolate HUN-1108, complete virion genome 4693_..........._______470357
EU147493.1 Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds4654_..........._______466457
EU144042.1 Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c4661_..........._______467157
AB426611.1 Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 4673_..........._______468357
FJ000001.1 Human coxsackievirus B3 strain Fuyang19, complete genome 4660_..........._______467057
GQ141875.1 Human coxsackievirus B3 strain Beijing0811, complete genome 4662_..........._______467257
AB501329.1 Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-24671_..........._______468157
AB501332.1 Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)-4671_..........._______468157
EF667344.1 Human enterovirus 92 strain RJG7, complete genome 5129__...........______513957