../../tmp/servers/virsirnadb/1240735950
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12761ggacaacttcactatgaaa19
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 2377...................2395100
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 5460_____...........___547057
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 2377...................2395100
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 5460_____...........___547057
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 2377...................2395100
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 2377...................2395100
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 2377...t...............239594
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 2378...t...............239694
EU812514.1 Human coxsackievirus A16 strain FY18 from China, complete genome 2383.........t..c......240189
EU812514.1 Human coxsackievirus A16 strain FY18 from China, complete genome 5462_.g.c...........___547668
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 2377.........t..c......239589
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 2377.........t..c......239589
EU703812.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete2376__.g...............239284
EU703813.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete2376__.g...............239284
EU703814.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete2376__.g...............239284
EU812515.1 Human enterovirus 71 strain FY23 from China, complete genome 2379__.g...............239584
EU864507.1 Human enterovirus 71 isolate EV71/Zhejiang08, complete genome 2377__.g...............239384
FJ158600.1 Human enterovirus 71 isolate DTID/ZJU-62, complete genome 2376__.g...............239284
FJ158601.1 Human enterovirus 71 isolate DTID/ZJU-74, complete genome 2376__.g...............239284
FJ194965.1 Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome 2376__.g...............239284
FJ360546.1 Human enterovirus 71 isolate GZ-08-03, complete genome 2375__.g...............239184
FJ439769.1 Human enterovirus 71 strain Fuyang-0805, complete genome 2376__.g...............239284
FJ606448.1 Human enterovirus 71 strain BJ08-Z011-4, complete genome 2376__.g...............239284
FJ606449.1 Human enterovirus 71 strain BJ08-Z020-1, complete genome 2376__.g...............239284
FJ606450.1 Human enterovirus 71 strain BJ08-Z025-5, complete genome 2376__.g...............239284
FJ713137.1 Human enterovirus 71 strain Shanghai 036-2009, complete genome 2378__.g...............239484
FJ828519.1 Human enterovirus 71 isolate BJ08, complete genome 2355__.g...............237184
FJ607334.1 Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g2375__.g...............239184
FJ607335.1 Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g2375__.g...............239184
FJ607337.1 Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co2375__.g...............239184
FJ607338.1 Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c2375__.g...............239184
GQ892830.1 Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome 2376__.g...............239284
GQ994988.1 Human enterovirus 71 strain Anhui1-09-China, complete genome 2376__.g...............239284
GU366191.1 Human enterovirus 71 strain Henan10-08-China, complete genome 2376__.g...............239284
GU396280.1 Human enterovirus 71 isolate EV71/Lanzhou01, complete genome 2376__.g...............239284
GU459070.1 Human enterovirus 71 isolate FY23-K12, complete genome 2379__.g...............239584
GU459071.1 Human enterovirus 71 isolate FY23-K14, complete genome 2376__.g...............239284
HM003207.1 Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome 2376__.g...............239284
GQ279370.1 Human enterovirus 71 strain SZ/HK08-6, complete genome 2376__.g...............239284
HM002484.1 Human enterovirus 71 strain BJ67, complete genome 2376__.g...............239284
HM002485.1 Human enterovirus 71 strain BJ97, complete genome 2376__.g...............239284
HM002486.1 Human enterovirus 71 strain BJ110, complete genome 2377__.g...............239384
HM002487.1 Human enterovirus 71 strain BJ303, complete genome 2377__.g...............239384
HM002488.1 Human enterovirus 71 strain BJ366, complete genome 2376__.g...............239284
HM002489.1 Human enterovirus 71 strain BJ398, complete genome 2377__.g...............239384
HM053669.1 Human enterovirus 71 strain BJ293, complete genome 2376__.g...............239284
HM053671.1 Human enterovirus 71 strain BJ462, complete genome 2376__.g...............239284
HQ407557.1 Human enterovirus 71 strain LN009, complete genome 2376__.g...............239284
HQ426649.1 Human enterovirus 71 strain 2010FJLY008, complete genome 2374__.g...............239084
HQ325852.1 Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome 2377__.g...............239384
HQ891923.1 Human enterovirus 71 strain Shanghai 27-2009, complete genome 2377__.g...............239384
HQ891924.1 Human enterovirus 71 strain Shanghai 28-2009, complete genome 2377__.g...............239384
HQ891925.1 Human enterovirus 71 strain Shanghai 36-2009, complete genome 2378__.g...............239484
HQ891926.1 Human enterovirus 71 strain Shanghai 51-2009, complete genome 2378__.g...............239484
HQ891927.1 Human enterovirus 71 strain Shanghai 64-2009, complete genome 2377__.g...............239384
HQ891928.1 Human enterovirus 71 strain Shanghai 117-2009, complete genome 2377__.g...............239384
HQ891929.1 Human enterovirus 71 strain Shanghai 118-2009, complete genome 2377__.g...............239384
HQ400942.1 Human enterovirus 71 HZ08/Hangzhou/2008, complete genome 2376__.g...............239284
HQ456306.1 Human enterovirus A strain GZ2010-134, complete genome 2376__.g...............239284
HQ456307.1 Human enterovirus A strain GZ2010-120, complete genome 2376__.g...............239284
HQ456309.1 Human enterovirus A strain GZ08-831, complete genome 2376__.g...............239284
HQ456310.1 Human enterovirus A strain GZ08-530, complete genome 2376__.g...............239284
HQ456311.1 Human enterovirus A strain GZ08-522, complete genome 2376__.g...............239284
HQ456312.1 Human enterovirus A strain GZ08-520, complete genome 2376__.g...............239284
HQ611148.1 Human enterovirus 71 strain AH08/06, complete genome 2376__.g...............239284
JN001860.1 Human enterovirus 71 strain NB/2010/01, complete genome 2377__.g...............239384
AF119796.3 Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds 2375.a.g.............._239284
AF119796.3 Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds 5163....ct.........c.._514678
EF373576.1 Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet2374.a.a.............._239184
DQ133458.1 Human enterovirus 71 strain 984 polyprotein gene, complete cds 2376__.g.............._239178
DQ133459.1 Human enterovirus 71 strain 1235 polyprotein gene, complete cds 2376__.g.............._239178
EU131776.1 Human enterovirus 71 strain N3340-TW-02, complete genome 2376__.g.............._239178
FJ194964.1 Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome 2376__.g.............._239178
FJ360544.1 Human enterovirus 71 isolate GZ-08-01, complete genome 2375__.g.............._239078
FJ606447.1 Human enterovirus 71 strain BJ08-Z004-3, complete genome 2376__.g.............._239178
GQ994991.1 Human enterovirus 71 strain Chongqing3-09-China, complete genome 2376__.g.............._239178
GQ994992.1 Human enterovirus 71 strain Henan2-09-China, complete genome 2368__.g.............._238378
HM053670.1 Human enterovirus 71 strain BJ393, complete genome 2376__.g.............._239178
AB550338.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat2375__.g.............._239078
AB550339.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat2375__.g.............._239078
HQ423142.1 Human enterovirus 71 strain KMM/09, complete genome 2376__.g.............._239178
HQ423143.1 Human enterovirus 71 strain KM186/09, complete genome 2376__.g.............._239178
HQ456305.1 Human enterovirus A strain GZ2010-156, complete genome 2376__.g.............._239178
HQ456313.1 Human enterovirus A strain GZ2010-95, complete genome 2376__.g.............._239178
AB575938.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1002349.a.a.....t.........236784
U22521.1ETU22521 Human enterovirus 71 polyprotein gene, complete cds 2377__.g..t............239378
AY421767.1 Human coxsackievirus A10 strain Kowalik, complete genome 2374_...........ct...._239078
AB204852.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR2377__.g..t............239378
AB204853.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts2377__.g..t............239378
FJ360545.1 Human enterovirus 71 isolate GZ-08-02, complete genome 2376__.g.....t.........239278
GQ994990.1 Human enterovirus 71 strain Chongqing2-09-China, complete genome 2376__.g..t............239278
GU434678.1 Human enterovirus 71 strain EV71-Hubei-09-China, complete genome 2377__.g..t............239378
HQ456308.1 Human enterovirus A strain GZ2010-118, complete genome 2376__.g..t............239278
AY302547.1 Human echovirus 21 strain Farina complete genome 1598__...........t...__161273
AY843297.1 Human enterovirus 79 strain USA/CA79-10384, complete genome 1605__...........t...__161973
AF119795.2 Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds 5163....ct.........c.._514678
AY421761.1 Human coxsackievirus A3 strain Olson, complete genome 5150....ct.........c.._513378
AY421761.1 Human coxsackievirus A3 strain Olson, complete genome 1581__...........t.____159363
AY421761.1 Human coxsackievirus A3 strain Olson, complete genome 817___..........._____82757
AY421764.1 Human coxsackievirus A6 strain Gdula, complete genome 5189....ct.........c.._517278
FJ172159.1 Human enterovirus 71 isolate NUH0075/SIN/08, complete genome 5125....ct.........c.._510878
AB575941.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2485103....ct.........c.._508678
AB575942.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3695098....ct.........c.._508178
AB575948.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1015121....ct.........c.._510478
AF302996.1 Enterovirus 71 strain SHZH98 polyprotein gene, complete cds 2377__.g..t..........._239273
AF302996.1 Enterovirus 71 strain SHZH98 polyprotein gene, complete cds 2397__.........tag.....238173
AF326764.2 Simian enterovirus 46 strain OM22 (P15), complete genome 2380___.........c....g.239573
GQ279369.1 Human enterovirus 71 strain SZ/HK08-5, complete genome 2376__.g..t..........._239173
GQ279369.1 Human enterovirus 71 strain SZ/HK08-5, complete genome 2398.c.........tag.....238078
HQ188292.1 Human enterovirus 71 strain Fuyang-0805a, complete genome 2379__.g..t..........._239473
HQ188292.1 Human enterovirus 71 strain Fuyang-0805a, complete genome 2399__.........tag.....238373
AF328683.1 Human coxsackievirus B4 polyprotein-like gene, complete sequence 5126_....g.........____511368
AB575923.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2026116_____...........c..612968
AB575923.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2022345.c.........tgg.....232778
DQ341355.1 Human enterovirus 71 isolate 06-KOR-00, complete genome 2400.c.........tgg.....238278
DQ341356.1 Human enterovirus 71 isolate 03-KOR-00, complete genome 2400.c.........tgg.....238278
DQ341358.1 Human enterovirus 71 isolate S40221-SAR-00, complete genome 2376.a.g..t..t.........239478
DQ341359.1 Human enterovirus 71 isolate S10862-SAR-98, complete genome 2376.a.g..t..t.........239478
DQ341361.1 Human enterovirus 71 isolate 1M-AUS-12-00, complete genome 2376.a.a..t..t.........239478
DQ381846.1 Human enterovirus 71 strain 6F/AUS/6/99, complete genome 2400.c.........tgg.....238278
EF063152.1 Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd2400.c.........tgg.....238278
EU414334.1 Human enterovirus 71 strain PLday4-CH-06, complete genome 2375.a.a..t..t.........239378
EU414335.1 Human enterovirus 71 strain PLday1-CH-06, complete genome 2375.a.a..t..t.........239378
AB550340.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org2376.a.g..t..t.........239478
AB550341.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS2376.a.g..t..t.........239478
AB575935.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 4802320.a.g..t..t.........233878
AB575936.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9612315.a.g..t..t.........233378
AB575937.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1412288.a.a..t..t.........230678
AB575939.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3652331.c.........tgg.....231378
DQ341357.1 Human enterovirus 71 isolate 7F-AUS-6-99, complete genome 2398__.........tgg.....238273
DQ452074.1 Human enterovirus 71 strain 804/NO/03, complete genome 2379__.a..t..t.........239573
AM396584.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P2397__.........tgg.....238173
AM396585.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P2397__.........tgg.....238173
AB550332.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org 2398__.........tgg.....238273
AB550333.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 2398__.........tgg.....238273
AY302542.1 Human echovirus 16 strain Harrington complete genome 1602__..........ac...__161668
AY302543.1 Human echovirus 17 strain CHHE-29 complete genome 1594__..........gt...__160868
AY302553.1 Human echovirus 3 strain Morrisey complete genome 1600__..........cc...__161468
AY843298.1 Human enterovirus 80 strain USA/CA67-10387, complete genome 1603__..........ct...__161768
AB426610.1 Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 1601__..........ct...__161568
AY302541.1 Human echovirus 15 strain CH 96-51 complete genome 5167__...g.........____515563
AY302544.1 Human echovirus 19 strain Burke complete genome 5163__...g.........____515163
AY302549.1 Human echovirus 25 strain JV-4 complete genome 4820__.........a...____480863
AJ577590.1 Human echovirus 11, isolate FIN-0666, complete virion genome 5162__..g..........____515063
DQ534205.1 Human echovirus 30 isolate 14916net87, complete genome 5159__...g.........____514763
AY421762.1 Human coxsackievirus A4 strain High Point, complete genome 6199______..........c..621163
AY421762.1 Human coxsackievirus A4 strain High Point, complete genome 5486_____...........___549657
DQ341354.1 Human enterovirus 71 isolate 3799-SIN-98, complete genome 6175______..........c..618763
DQ341367.1 Human enterovirus 71 isolate MY821-3-SAR-97, complete genome 6174______..........c..618663
DQ341368.1 Human enterovirus 71 isolate MY104-9-SAR-97, complete genome 6174______..........c..618663
AM396586.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/6174______..........c..618663
AM396588.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/6165______..........c..617763
EU364841.1 Human enterovirus 71 strain 26M/AUS/4/99, complete genome 6175______..........c..618763
EU376004.1 Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome 6175______..........c..618763
EU376005.1 Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome 6175______..........c..618763
AB469182.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E6173______..........c..618563
AB469183.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: EV716908______..........c..692063
AB550334.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o6173______..........c..618563
AB550335.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L6173______..........c..618563
AB575913.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1196100______..........c..611263
AB575913.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1195387_____...........___539757
AB575914.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1706109______..........c..612163
AB575914.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1705396_____...........___540657
AY421769.1 Human coxsackievirus A14 strain G-14, complete genome 5467_____...........___547757
AB482183.1 Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya 5462_____...........___547257