../../tmp/servers/virsirnadb/484789029
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi14981ggatgtggacttttcggga19
D90194.1JEVSAV Japanese encephalitis virus strain SA(V) genomic RNA, complete 1287...................1305100
M55506.1JEVCMNAA Japanese encephalitis SA-14 virus, complete genome 1287...................1305100
U14163.1JEU14163 Japanese encephalitis virus SA14 polyprotein mRNA, complete c1287...................1305100
U15763.1JEU15763 Japanese encephalitis virus C, prM, M, E, NS1, NS2A, NS2B, NS1287...................1305100
L48961.1JEVBEICG Japanese encephalitis virus (strain Beijing-1), complete geno1287...................1305100
L48961.1JEVBEICG Japanese encephalitis virus (strain Beijing-1), complete geno665...........________67557
L48961.1JEVBEICG Japanese encephalitis virus (strain Beijing-1), complete geno14___.........c.t..__2763
U47032.1JEU47032 Japanese encephalitis virus strain p3, complete genome 1287...................1305100
U47032.1JEU47032 Japanese encephalitis virus strain p3, complete genome 665...........g..g.t._68278
AF014160.1 Japanese encephalitis virus polyprotein gene, complete cds 1287...................1305100
AF014161.1 Japanese encephalitis virus polyprotein gene, complete cds 1287...................1305100
AF075723.1 Japanese encephalitis virus strain GP78, complete genome 1287...................1305100
AF098735.1 Japanese encephalitis virus strain HVI, complete genome 1287...................1305100
AF098736.1 Japanese encephalitis virus strain TC, complete genome 1287...................1305100
AF098737.1 Japanese encephalitis virus strain TL, complete genome 1287...................1305100
AF069076.1 Japanese encephalitis virus JaGAr 01 complete genome 1287...................1305100
AF045551.2 Japanese encephalitis virus strain K94P05, complete genome 1287...................1305100
AB051292.1 Japanese encephalitis virus gene for viral protein, complete cds 1288...................1306100
L78128.1JEVLINGCG Japanese encephalitis virus strain Ling, complete genome 1287...................1305100
L78128.1JEVLINGCG Japanese encephalitis virus strain Ling, complete genome 665...........________67557
AF486638.1 Japanese encephalitis virus strain YL polyprotein mRNA, complete cds 1287...................1305100
AF254452.1 Japanese encephalitis virus strain CH1392 complete genome 1287...................1305100
AF254453.1 Japanese encephalitis virus strain T1P1 complete genome 1287...................1305100
AY316157.1 Japanese encephalitis virus strain KV1899, complete genome 1287...................1305100
AY303791.1 Japanese encephalitis virus strain T1P1-S1, complete genome 1287...................1305100
AY303792.1 Japanese encephalitis virus strain T1P1-L4, complete genome 1287...................1305100
AY303795.1 Japanese encephalitis virus strain CC27-L1, complete genome 1287...................1305100
AY303796.1 Japanese encephalitis virus strain CC27-L3, complete genome 1287...................1305100
AY303797.1 Japanese encephalitis virus strain CC27-S6, complete genome 1287...................1305100
AY303798.1 Japanese encephalitis virus strain CC27-S8, complete genome 1287...................1305100
AY508812.1 Japanese encephalitis virus strain ML17 (live vaccine)/Japan/1981/hum1287...................1305100
AY508812.1 Japanese encephalitis virus strain ML17 (live vaccine)/Japan/1981/hum665...........________67557
AY508813.1 Japanese encephalitis virus strain JaOH0566/Japan/1966/human, complet1287...................1305100
AY508813.1 Japanese encephalitis virus strain JaOH0566/Japan/1966/human, complet665...........________67557
AY585242.1 Japanese encephalitis virus strain K87P39, complete genome 1287...................1305100
AY585243.1 Japanese encephalitis virus CNU/LP2, complete genome 1287...................1305100
AB196923.1 Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-A1287...................1305100
AB196924.1 Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-a1287...................1305100
AB196925.1 Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-r1287...................1305100
AB196926.1 Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-A1287...................1305100
AY849939.1 Japanese encephalitis virus strain HW, complete genome 1287...................1305100
AY849939.1 Japanese encephalitis virus strain HW, complete genome 665...........g..g.t._68278
AB241118.1 Japanese encephalitis virus genomic RNA, complete genome, strain: JEV1288...................1306100
AB241119.1 Japanese encephalitis virus genomic RNA, complete genome, strain: JEV1288...................1306100
EF107523.1 Japanese encephalitis virus strain WHe, complete genome 1287...................1305100
EF107523.1 Japanese encephalitis virus strain WHe, complete genome 665...........g..g.t._68278
EF543861.1 Japanese encephalitis virus strain SH0601, complete genome 1287...................1305100
EF571853.1 Japanese encephalitis virus strain Nakayama, complete genome 1287...................1305100
EF623987.1 Japanese encephalitis virus isolate 014178, complete genome 1287...................1305100
EF623988.1 Japanese encephalitis virus isolate 057434, complete genome 1287...................1305100
EF623989.1 Japanese encephalitis virus isolate 04940-4, complete genome 1287...................1305100
EU429297.1 Japanese encephalitis virus strain SH17M-07, complete genome 1288...................1306100
EU693899.1 Japanese encephalitis virus strain XJP613, complete genome 1288...................1306100
EU693899.1 Japanese encephalitis virus strain XJP613, complete genome 14___.........c.t..__2763
EU880214.1 Japanese encephalitis virus strain XJ69, complete genome 1288...................1306100
EU880214.1 Japanese encephalitis virus strain XJ69, complete genome 14___.........c.t..__2763
FJ495189.1 Japanese encephalitis virus isolate HEN0701, complete genome 1288...................1306100
GQ199609.1 Japanese encephalitis virus clone CNU/LP2x, complete genome 1287...................1305100
GU187972.1 Japanese encephalitis virus strain SC04-17, complete genome 1288...................1306100
GU556217.1 Japanese encephalitis virus strain JX61, complete genome 1288...................1306100
GU556217.1 Japanese encephalitis virus strain JX61, complete genome 14___.........c.t..__2763
AB551990.1 Japanese encephalitis virus RNA, complete genome, strain: JaTAn1/75 1287...................1305100
AB551991.1 Japanese encephalitis virus RNA, complete genome, strain: JaTAn1/90 1287...................1305100
AB551992.1 Japanese encephalitis virus RNA, complete genome, strain: JaTAn2/91 1287...................1305100
GQ918133.2 Japanese encephalitis virus strain NJ 2008, complete genome 1287...................1305100
GU205163.1 Japanese encephalitis virus strain 131V, complete genome 1288...................1306100
HM228921.1 Japanese encephalitis virus strain 90VN70, complete genome 1288...................1306100
GQ902058.1 Japanese encephalitis virus strain B-0860/82, complete genome 1288...................1306100
GQ902059.1 Japanese encephalitis virus strain 1070/82 (Subin), complete genome 1288...................1306100
GQ902060.1 Japanese encephalitis virus strain 3KP''U''CV569, complete genome 1288...................1306100
GQ902061.1 Japanese encephalitis virus strain B-1381-85, complete genome 1288...................1306100
GQ902062.1 Japanese encephalitis virus strain 4790-85, complete genome 1288...................1306100
GQ902063.1 Japanese encephalitis virus strain KPP82-39-214CT, complete genome 1288...................1306100
HM366552.1 Japanese encephalitis virus isolate GZ56, complete genome 1288...................1306100
HQ893545.1 Japanese encephalitis virus isolate SX09S-01, complete genome 1288...................1306100
AB594829.1 Japanese encephalitis virus genomic RNA, complete genome, strain: JEV1288...................1306100
M18370.1JEVCG Japanese encephalitis virus (strain JaOArS982), complete genome 1287...................1305100
D90195.1JEVSAA Japanese encephalitis virus strain SA(A) genomic RNA, complete 1287.........t.........130594
AF221499.1 Japanese encephalitis virus isolate CH2195LA, complete genome 1287...........c.......130594
AF221500.1 Japanese encephalitis virus isolate CH2195SA, complete genome 1287...........c.......130594
AF315119.1 Japanese encephalitis virus strain SA14-14-2, complete genome 1287.........t.........130594
AF416457.1 Japanese encephalitis virus attenuated strain SA14-12-1-7, complete g1287.........t.........130594
AY303793.1 Japanese encephalitis virus strain CJN-S1, complete genome 1287...........c.......130594
AY303793.1 Japanese encephalitis virus strain CJN-S1, complete genome 8498_.c.........c..____848563
AY303794.1 Japanese encephalitis virus strain CJN-L1, complete genome 1287...........c.......130594
AY303794.1 Japanese encephalitis virus strain CJN-L1, complete genome 8498_.c.........c..____848563
AY184212.1 Japanese encephalitis virus strain JKT6468 polyprotein gene, complete1287..............t..a.130589
AY184212.1 Japanese encephalitis virus strain JKT6468 polyprotein gene, complete7917..........g._______792857
AY184212.1 Japanese encephalitis virus strain JKT6468 polyprotein gene, complete8496___.........c..____848557
AF217620.1 Japanese encephalitis virus FU strain, complete genome 1287...........c.c...a.130584
AF080251.1 Japanese encephalitis virus isolate Vellore P20778, complete genome 665...........g..g.t._68278