../../tmp/servers/virsirnadb/1355815384
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12742gtcgtctaatgctagtga19
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 2602..................261994
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 2602..................261994
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 2602..................261994
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 2603..................262094
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 2603_.................261989
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 2602......a...........261989
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 2602......a...........261989
AB575911.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1002538......a...........255589
AB575912.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1082552......a...........256989
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 2602......a...........261989
U22521.1ETU22521 Human enterovirus 71 polyprotein gene, complete cds 2601_.....g...........261784
U22521.1ETU22521 Human enterovirus 71 polyprotein gene, complete cds 4737_...a.c.........a.475373
AB204852.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR2601_.....g...........261784
AB204852.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR4737_...a.c.........a.475373
AB204853.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts2601_.....g...........261784
AB204853.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts4737_...a.c.........a.475373
DQ341358.1 Human enterovirus 71 isolate S40221-SAR-00, complete genome 2602_.....a...........261884
EF063152.1 Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd2602_.....a...........261884
FJ172159.1 Human enterovirus 71 isolate NUH0075/SIN/08, complete genome 2563_.....a...........257984
FJ360544.1 Human enterovirus 71 isolate GZ-08-01, complete genome 2599_.....a...........261584
GQ994991.1 Human enterovirus 71 strain Chongqing3-09-China, complete genome 2600_.....a...........261684
GU434678.1 Human enterovirus 71 strain EV71-Hubei-09-China, complete genome 2601_.....g...........261784
GU434678.1 Human enterovirus 71 strain EV71-Hubei-09-China, complete genome 4737_...a.c.........a.475373
HQ456313.1 Human enterovirus A strain GZ2010-95, complete genome 2600_..a..............261684
FJ607336.1 Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete 2597...a..a...........261484
AF136379.1 Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds 2603_..a..a...........261978
AF119796.3 Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds 2601_..a..a...........261778
AF176044.1 Enterovirus 71 polyprotein gene, complete cds 2604_..a..a...........262078
AF302996.1 Enterovirus 71 strain SHZH98 polyprotein gene, complete cds 2601_..a..a...........261778
AF304457.1 Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds 2603_..a..a...........261978
AF304458.1 Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds 2603_..a..a...........261978
AF304459.1 Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds 2603_..a..a...........261978
AY465356.1 Human enterovirus 71 strain SHZH03, complete genome 2600_..a..a...........261678
DQ060149.1 Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome 2603_..a..a...........261978
DQ133458.1 Human enterovirus 71 strain 984 polyprotein gene, complete cds 2600_..a..a...........261678
DQ133459.1 Human enterovirus 71 strain 1235 polyprotein gene, complete cds 2600_..a..a...........261678
DQ341355.1 Human enterovirus 71 isolate 06-KOR-00, complete genome 2602_..a..a...........261878
DQ341356.1 Human enterovirus 71 isolate 03-KOR-00, complete genome 2602_..a..a...........261878
DQ341357.1 Human enterovirus 71 isolate 7F-AUS-6-99, complete genome 2602_..a..a...........261878
DQ341357.1 Human enterovirus 71 isolate 7F-AUS-6-99, complete genome 1284___..g..........a.129868
DQ341360.1 Human enterovirus 71 isolate J115-MAL-01, complete genome 2601_..a..a...........261778
DQ341361.1 Human enterovirus 71 isolate 1M-AUS-12-00, complete genome 2602_..a..a...........261878
DQ381846.1 Human enterovirus 71 strain 6F/AUS/6/99, complete genome 2602_..a..a...........261878
DQ452074.1 Human enterovirus 71 strain 804/NO/03, complete genome 2603_..a..a...........261978
AM396584.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P2601_..a..a...........261778
AM396585.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P2601_..a..a...........261778
EF373576.1 Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet2600_..a..a...........261678
EU131776.1 Human enterovirus 71 strain N3340-TW-02, complete genome 2600_..a..a...........261678
EU414334.1 Human enterovirus 71 strain PLday4-CH-06, complete genome 2601_..a..a...........261778
EU414335.1 Human enterovirus 71 strain PLday1-CH-06, complete genome 2601_..a..a...........261778
EU703812.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete2600_..a..a...........261678
EU703813.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete2600_..a..a...........261678
EU703814.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete2600_..a..a...........261678
EU812515.1 Human enterovirus 71 strain FY23 from China, complete genome 2603_..a..a...........261978
EU864507.1 Human enterovirus 71 isolate EV71/Zhejiang08, complete genome 2601_..a..a...........261778
FJ158600.1 Human enterovirus 71 isolate DTID/ZJU-62, complete genome 2600_..a..a...........261678
FJ194964.1 Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome 2600_..a..a...........261678
FJ194965.1 Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome 2600_..a..a...........261678
FJ360545.1 Human enterovirus 71 isolate GZ-08-02, complete genome 2600_..a..a...........261678
FJ360546.1 Human enterovirus 71 isolate GZ-08-03, complete genome 2599_..a..a...........261578
FJ439769.1 Human enterovirus 71 strain Fuyang-0805, complete genome 2600_..a..a...........261678
FJ606447.1 Human enterovirus 71 strain BJ08-Z004-3, complete genome 2600_..a..a...........261678
FJ606448.1 Human enterovirus 71 strain BJ08-Z011-4, complete genome 2600_..a..a...........261678
FJ606449.1 Human enterovirus 71 strain BJ08-Z020-1, complete genome 2600_..a..a...........261678
FJ606450.1 Human enterovirus 71 strain BJ08-Z025-5, complete genome 2600_..a..a...........261678
FJ713137.1 Human enterovirus 71 strain Shanghai 036-2009, complete genome 2602_..a..a...........261878
FJ828519.1 Human enterovirus 71 isolate BJ08, complete genome 2579_..a..a...........259578
FJ607334.1 Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g2599_..a..a...........261578
FJ607335.1 Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g2599_..a..a...........261578
FJ607337.1 Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co2599_..a..a...........261578
FJ607338.1 Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c2599_..a..a...........261578
GQ892830.1 Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome 2600_..a..a...........261678
GQ994988.1 Human enterovirus 71 strain Anhui1-09-China, complete genome 2600_..a..a...........261678
GQ994989.1 Human enterovirus 71 strain Chongqing1-09-China, complete genome 2601_..a..a...........261778
GQ994990.1 Human enterovirus 71 strain Chongqing2-09-China, complete genome 2600_..a..a...........261678
GQ994992.1 Human enterovirus 71 strain Henan2-09-China, complete genome 2592_..a..a...........260878
GU196833.1 Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet2412_..a..a...........242878
GU366191.1 Human enterovirus 71 strain Henan10-08-China, complete genome 2600_..a..a...........261678
GU396280.1 Human enterovirus 71 isolate EV71/Lanzhou01, complete genome 2600_..a..a...........261678
GU459070.1 Human enterovirus 71 isolate FY23-K12, complete genome 2603_..a..a...........261978
GU459071.1 Human enterovirus 71 isolate FY23-K14, complete genome 2600_..a..a...........261678
HM003207.1 Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome 2600_..a..a...........261678
GQ279369.1 Human enterovirus 71 strain SZ/HK08-5, complete genome 2600_..a..a...........261678
GQ279370.1 Human enterovirus 71 strain SZ/HK08-6, complete genome 2600_..a..a...........261678
HM002484.1 Human enterovirus 71 strain BJ67, complete genome 2600_..a..a...........261678
HM002485.1 Human enterovirus 71 strain BJ97, complete genome 2600_..a..a...........261678
HM002486.1 Human enterovirus 71 strain BJ110, complete genome 2601_..a..a...........261778
HM002487.1 Human enterovirus 71 strain BJ303, complete genome 2601_..a..a...........261778
HM002488.1 Human enterovirus 71 strain BJ366, complete genome 2600_..a..a...........261678
HM002489.1 Human enterovirus 71 strain BJ398, complete genome 2601_..a..a...........261778
HM053669.1 Human enterovirus 71 strain BJ293, complete genome 2600_..a..a...........261678
HM053670.1 Human enterovirus 71 strain BJ393, complete genome 2600_..a..a...........261678
HM053671.1 Human enterovirus 71 strain BJ462, complete genome 2600_..a..g...........261678
HQ407557.1 Human enterovirus 71 strain LN009, complete genome 2600_..a..a...........261678
AB550332.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org 2602_..a..g...........261878
AB550333.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 2602_..a..g...........261878
AB550338.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat2599_..a..a...........261578
AB550339.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat2599_..a..a...........261578
AB550340.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org2602_..a..a...........261878
AB550341.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS2602_..a..a...........261878
HQ188292.1 Human enterovirus 71 strain Fuyang-0805a, complete genome 2603_..a..a...........261978
HQ325852.1 Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome 2601_..a..a...........261778
AB575935.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 4802546_..a..a...........256278
AB575936.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9612541_..a..a...........255778
AB575936.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9614677_..ca...........a.469373
AB575937.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1412514_..a..a...........253078
AB575938.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1002575_..a..a...........259178
AB575939.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3652533_..a..a...........254978
AB575941.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2482541_..a..a...........255778
AB575942.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3692536_..a..a...........255278
AB575948.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1012559_..a..a...........257578
HQ891923.1 Human enterovirus 71 strain Shanghai 27-2009, complete genome 2601_..a..a...........261778
HQ891924.1 Human enterovirus 71 strain Shanghai 28-2009, complete genome 2601_..a..a...........261778
HQ891925.1 Human enterovirus 71 strain Shanghai 36-2009, complete genome 2602_..a..a...........261878
HQ891926.1 Human enterovirus 71 strain Shanghai 51-2009, complete genome 2602_..a..a...........261878
HQ891927.1 Human enterovirus 71 strain Shanghai 64-2009, complete genome 2601_..a..a...........261778
HQ891928.1 Human enterovirus 71 strain Shanghai 117-2009, complete genome 2601_..a..a...........261778
HQ891929.1 Human enterovirus 71 strain Shanghai 118-2009, complete genome 2601_..a..a...........261778
HQ400942.1 Human enterovirus 71 HZ08/Hangzhou/2008, complete genome 2600_..a..a...........261678
HQ423142.1 Human enterovirus 71 strain KMM/09, complete genome 2600_..a..a...........261678
HQ423143.1 Human enterovirus 71 strain KM186/09, complete genome 2600_..a..a...........261678
HQ456305.1 Human enterovirus A strain GZ2010-156, complete genome 2600_..a..a...........261678
HQ456306.1 Human enterovirus A strain GZ2010-134, complete genome 2600_..a..g...........261678
HQ456307.1 Human enterovirus A strain GZ2010-120, complete genome 2600_..a..a...........261678
HQ456308.1 Human enterovirus A strain GZ2010-118, complete genome 2600_..a..a...........261678
HQ456309.1 Human enterovirus A strain GZ08-831, complete genome 2600_..a..a...........261678
HQ456310.1 Human enterovirus A strain GZ08-530, complete genome 2600_..a..a...........261678
HQ456311.1 Human enterovirus A strain GZ08-522, complete genome 2600_..a..a...........261678
HQ456312.1 Human enterovirus A strain GZ08-520, complete genome 2600_..a..a...........261678
HQ611148.1 Human enterovirus 71 strain AH08/06, complete genome 2600_..a..a...........261678
JN001860.1 Human enterovirus 71 strain NB/2010/01, complete genome 2601_..a..a...........261778
HQ426649.1 Human enterovirus 71 strain 2010FJLY008, complete genome 2599__.a..a...........261473
DQ341359.1 Human enterovirus 71 isolate S10862-SAR-98, complete genome 4738_..ta...........a.475473
EF373575.1 Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet2606_.........a.c..c..262273
AB192877.1 Human enterovirus 90 genomic RNA, complete genome 1289___..g..........a.130368
EU812514.1 Human coxsackievirus A16 strain FY18 from China, complete genome 2541_____.c...........255363