../../tmp/servers/virsirnadb/997594197
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi10101ggttgaagttaaacctgct19
M59808.1HPA18F Hepatitis A virus polyprotein RNA, complete cds 4767...................4785100
M59810.1HPA24A Hepatitis A virus polyprotein RNA, complete cds 4768...................4786100
M59809.1HPA43C Hepatitis A virus polyprotein RNA, complete cds 4767...................4785100
M16632.1HPAA Hepatitis A virus (attenuated) RNA, complete genome 4779...................4797100
K02990.1HPAACG Human hepatitis A virus, complete genome 4783...................4801100
AB020564.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH1 4783...................4801100
AB020564.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH1 1455____.g.........____144552
AB020565.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH2 4783...................4801100
AB020566.1 Hepatitis A virus genomic RNA, complete sequence, isolate AH3 4784...................4802100
AB020567.1 Hepatitis A virus genomic RNA, complete sequence, isolate FH1 4783...................4801100
AB020568.1 Hepatitis A virus genomic RNA, complete sequence, isolate FH2 4784...................4802100
AB020568.1 Hepatitis A virus genomic RNA, complete sequence, isolate FH2 4455__..........g._____444457
AB020569.1 Hepatitis A virus genomic RNA, complete sequence, isolate FH3 4783...................4801100
AF268396.1 Hepatitis A virus polyprotein precursor, gene, complete cds 4774...................4792100
DQ646426.1 Hepatitis A virus strain IVA, complete genome 4800...................4818100
EF207320.1 Hepatitis A virus strain LP014, complete genome 4737...................4755100
EF406357.1 Hepatitis A virus strain H2 polyprotein gene, complete cds 4730...................4748100
EU131373.1 Hepatitis A virus genomic RNA, complete sequence, isolate HAV5 4784...................4802100
EU251188.1 Hepatitis A virus strain VBA-07, complete genome 4799...................4817100
EU526088.1 Hepatitis A virus isolate HAV6, complete genome 4782...................4800100
EU526089.1 Hepatitis A virus isolate HAV12, complete genome 4784...................4802100
HQ437707.1 Hepatitis A virus strain HepA-293, complete genome 4799...................4817100
HM769724.1 Hepatitis A virus isolate HAV-Arg/06, complete genome 4783...................4801100
HM769724.1 Hepatitis A virus isolate HAV-Arg/06, complete genome 4454__............_____444363
M14707.1HPA Hepatitis A virus (wild-type) RNA, complete genome 4784...................4802100
X75215.1 Hepatitis A virus GBM/WT RNA 4737.................._475494
X75216.1 Hepatitis A virus GBM/HFS RNA 4737.................._475494
M20273.1HPACG Human hepatitis virus type A RNA, complete genome 4776............t......479494
AF314208.1 Hepatitis A virus polyprotein gene, complete cds 4786..........g........480494
AF485328.1 Hepatitis A virus isolate LY6, complete genome 4783......g............480194
AF357222.1 Hepatitis A virus isolate LU38/WT polyprotein gene, complete cds 4783......g............480194
AF512536.1 Hepatitis A virus isolate DL3, complete genome 4782......g............480094
EF406358.1 Hepatitis A virus strain H2K5 polyprotein gene, complete cds 4733..........g........475194
EF406359.1 Hepatitis A virus strain H2K10 polyprotein gene, complete cds 4732..........g........475094
EF406360.1 Hepatitis A virus strain H2K15 polyprotein gene, complete cds 4733..........g........475194
EF406361.1 Hepatitis A virus strain H2K20 polyprotein gene, complete cds 4733..........g........475194
EF406362.1 Hepatitis A virus strain H2K25 polyprotein gene, complete cds 4733..........g........475194
EF406363.1 Hepatitis A virus strain H2K30 polyprotein gene, complete cds 4733..........g........475194
X75214.1 Hepatitis A virus GBM/FRhK RNA 4719.........c........_473689
X75214.1 Hepatitis A virus GBM/FRhK RNA 3703_..........t.aa.a..372073
X83302.1 Hepatitis A virus complete genome 4737.........c........_475489
X83302.1 Hepatitis A virus complete genome 4408__............_____439763
X83302.1 Hepatitis A virus complete genome 3721_..........t.aa.a..373873
AY644670.1 Hepatitis A virus strain SLF88, complete genome 4736__.......g.........475284
AY644337.1 Hepatitis A virus strain HMH polyprotein gene, partial cds 4240______...........__423057
AJ299464.3 Hepatitis A virus polyprotein, genomic RNA, strain NOR-21 4207______...........__419757
DQ991029.1 Hepatitis A virus isolate CP-IND, complete genome 4286______...........__427657
DQ991030.1 Hepatitis A virus isolate GBS-IND, complete genome 4286______...........__427657
AB279733.1 Hepatitis A virus genomic RNA, complete genome, isolate: HA-JNG08-92 4285______...........__427557
AB279734.1 Hepatitis A virus genomic RNA, complete genome, isolate: HAJ95-8 4286______...........__427657
EU011791.1 Hepatitis A virus isolate PN-IND, complete genome 4249______...........__423957
FJ360730.1 Hepatitis A virus isolate IND-HAV-06F, complete genome 4285______...........__427557
FJ360731.1 Hepatitis A virus isolate IND-HAV-07F, complete genome 4285______...........__427557
FJ360732.1 Hepatitis A virus isolate IND-HAV-08F, complete genome 4285______...........__427557
FJ360733.1 Hepatitis A virus isolate IND-HAV-95F, complete genome 4285______...........__427557
FJ360735.1 Hepatitis A virus isolate IND-HAV-97F, complete genome 4285______...........__427557
D00924.1SHVAGM27 Simian hepatitis A virus gene for polyprotein, complete cds 4402__.a.........._____439157
D00924.1SHVAGM27 Simian hepatitis A virus gene for polyprotein, complete cds 2727_______.........___271947
EU140838.1 Simian hepatitis A virus, complete genome 4402__.a.........._____439157
EU140838.1 Simian hepatitis A virus, complete genome 2727_______.........___271947
FJ360734.1 Hepatitis A virus isolate IND-HAV-99F, complete genome 4284_______..........__427552
FJ360734.1 Hepatitis A virus isolate IND-HAV-99F, complete genome 2765___..gt.........___275357
AY644676.1 Hepatitis A virus isolate CF53/Berne, complete genome 2731_______.........___272347