../../tmp/servers/virsirnadb/560279608
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi17961gtacagggataaacattac19
M33854.1CXA3CG Coxsackievirus B3 (CVB3) complete genome 6735...................6753100
M88483.1CXAB3CG Coxsackievirus B3 mRNA, complete genome 6736...................6754100
AF231763.1 Coxsackievirus B3 strain 31-1-93, complete genome 6736...................6754100
AF231764.1 Coxsackievirus B3 strain P, complete genome 6736...................6754100
AF231765.1 Coxsackievirus B3 strain PD, complete genome 6736...................6754100
AY752945.1 Human coxsackievirus B3 strain 0, complete genome 6736...................6754100
AY752946.1 Human coxsackievirus B3 strain 20, complete genome 6736...................6754100
AY843298.1 Human enterovirus 80 strain USA/CA67-10387, complete genome 6764...................6782100
EU147493.1 Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds6729...................6747100
AY752944.2 Human coxsackievirus B3 strain 28, complete genome 6736...................6754100
HM775882.1 Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome 6765...................6783100
X84981.1 Echovirus 9 (strain Hill), complete genome 6757.................._677494
AY302541.1 Human echovirus 15 strain CH 96-51 complete genome 6773.................._679094
M16572.1CXA3G Coxsackievirus B3, complete genome 6734.......a...........675294
AF230973.1AF230973 Enterovirus Yanbian 96-83csf, complete genome 6735.........c.........675394
AF524867.1 Human echovirus 9 isolate DM, complete genome 6790...............c...680894
AY302542.1 Human echovirus 16 strain Harrington complete genome 6769.........c.........678794
AY302546.1 Human echovirus 20 strain JV-1 complete genome 6730............g......674894
AY302551.1 Human echovirus 27 strain Bacon complete genome 6747......a............676594
AY302557.1 Human echovirus 4 strain Pesacek complete genome 6730............g......674894
AY843301.1 Human enterovirus 83 strain USA/CA76-10392, complete genome 6730............g......674894
AY843303.1 Human enterovirus 85 strain BAN00-10353, complete genome 6757......a............677594
FJ357838.1 Human coxsackievirus B3 strain GZ803, complete genome 6738...t...............675694
GU109481.1 Human coxsackievirus B3 strain SSM-CVB3, complete genome 6733...............c...675194
U57056.1CXU57056 Coxsackievirus B3 Woodruff variant, complete genome 6736.........c........_675389
AF317694.1 Human echovirus 18 strain Metcalf polyprotein gene, complete cds 6746......a..........._676389
AF317694.1 Human echovirus 18 strain Metcalf polyprotein gene, complete cds 3504_.c....a.c.........352178
AY186745.1 Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds 6708_..............c...672589
AY186746.1 Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds 6708_..............c...672589
AY186747.1 Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds6708_..............c...672589
AY186748.1 Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds6708_..............c...672589
AY896765.1 Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g6740_.....a............675789
X54521.1 Swine vesicular disease virus complete genomic RNA 6736.........c.....c...675489
D00435.1SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl6737.........c.....c...675589
AF268065.1 Swine vesicular disease virus strain NET/1/92, complete genome 6737.........c.....c...675589
AY036578.1 Human echovirus 7 strain UMMC polyprotein gene, complete cds 6762............g..c...678089
AY302560.1 Enterovirus 69 strain Toluca-1 complete genome 6747.........c..g......676589
AY429470.1 Swine vesicular disease virus strain HK'70, complete genome 6737.........c.....c...675589
AJ577594.1 Human echovirus 11, isolate ROU-9191, complete virion genome 6768.........c.....c...678689
AY875692.1 Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome 6739......a..c.........675789
AY875692.1 Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome 3497_.c....a.c.........351478
AY896763.1 Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen6711.........c.....c...672989
AY896763.1 Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen3472____...a.c.........348668
EF634316.1 Human echovirus 11 strain D207, complete genome 6769.........c.....c...678789
EU887279.1 Swine vesicular disease virus SVDV02, complete genome 6737.........c.....c...675589
EU887280.1 Swine vesicular disease virus SVDV03, complete genome 6737.........c.....c...675589
EU887281.1 Swine vesicular disease virus SVDV04, complete genome 6737.........c.....c...675589
EU887282.1 Swine vesicular disease virus SVDV, complete genome 6737.........c.....c...675589
HM777023.1 Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome 6749.....a...c.........676789
D00627.1CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G6785.........c..g....._680284
AF114383.1 Coxsackievirus B5 strain Faulkner, complete genome 6736.........c.....c.._675384
AY302547.1 Human echovirus 21 strain Farina complete genome 6762.........c..g....._677984
DQ534205.1 Human echovirus 30 isolate 14916net87, complete genome 6765.....aa..........._678284
DQ534205.1 Human echovirus 30 isolate 14916net87, complete genome 3522..c....a.c.........354084
EF174469.1 Human coxsackievirus B2 isolate KOR 04-279, complete genome 6742.........c..g....._675984
D16364.1SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd6737.........c.g...c...675584
AY302540.1 Human echovirus 14 strain Tow complete genome 6786.....aa..c.........680484
AJ577590.1 Human echovirus 11, isolate FIN-0666, complete virion genome 6768.........c..g..c...678684
EF174468.1 Human coxsackievirus B2 isolate KOR 04-243, complete genome 6742......a.gc.........676084
EU887278.1 Swine vesicular disease virus SVDV01, complete genome 6737.........c.g...c...675584
AB426611.1 Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 6748...t..a..c.........676684
AY843299.1 Human enterovirus 81 strain USA/CA68-10389, complete genome 6752_...........g..c.._676878
FJ194965.1 Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome 5733__..c............__571973
GQ994989.1 Human enterovirus 71 strain Chongqing1-09-China, complete genome 5734__..c............__572073
GQ994990.1 Human enterovirus 71 strain Chongqing2-09-China, complete genome 5733__..t............__571973
FM955278.1 Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA172034.g..........g...a._201778
X67706.1 Coxsackievirus B5 complete genome 3495_.c....a.c.........351278
AY843307.1 Human enterovirus 97 strain BAN99-10355, complete genome 3506_.c...aa...........352378
AY876912.1 Human enterovirus Ningbo3-02, complete genome 5802__.........t....___578968
AY876913.1 Human enterovirus Hangzhou13-02, complete genome 5802__.........t....___578968
DQ443001.1 Human coxsackievirus A24 isolate DSO-52/2005, complete genome 5807__.........t....___579468
DQ443002.1 Human coxsackievirus A24 isolate DSO-26/2005, complete genome 5807__.........t....___579468
DQ902712.1 Human enterovirus 84 isolate CIV2003-10603, complete genome 6759...tc.a..c.........677778
AY697460.1 Human enterovirus 90 polyprotein gene, complete cds 3536..c..t.a.c.........355478
AY302543.1 Human echovirus 17 strain CHHE-29 complete genome 3513____.a.a...........352768
DQ246620.1 Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome 5738_.........gt....___572468
D00625.1POL2CG1 Human poliovirus 2 genomic RNA, complete genome 3472_____.c..........._348463
AF546702.1 Human coxsackievirus A21 strain Kuykendall, complete genome 1995__.t...........____198363
AF465515.1 Human coxsackievirus A21 strain Kuykendall, complete genome 1995__.t...........____198363
HM185055.1 Human echovirus 6 strain Echo6/Henan/116/2008, complete genome 582...t.........______57063
AJ544513.1 Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050 4242___..........._____425257