../../tmp/servers/virsirnadb/2129142013
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12021gtgaaaggtccgtgagccg19
D85516.1 Hepatitis C virus genomic RNA, complete cds 9472...................9490100
AF011751.1 Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds 9536...................9554100
AF011752.1 Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds 9536...................9554100
AF011753.1 Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds 9536...................9554100
D89815.1 Hepatitis C virus genomic RNA, complete sequence 9485...................9503100
AF054247.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete9532...................9550100
AF054248.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete9532...................9550100
AF054249.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete9533...................9551100
AJ238799.1 Hepatitis C virus type 1b complete genome, isolate Con1 9542...................9560100
AF176573.1 Hepatitis C virus subtype 1b strain 274933RU, complete genome 9537...................9555100
AB016785.1 Hepatitis C virus genomic RNA, complete sequence 9475...................9493100
AF169002.1 Hepatitis C virus subtype 2a isolate NDM228, complete genome 9597...................9615100
AF169003.1 Hepatitis C virus subtype 2a isolate G2aK1, complete genome 9630...................9648100
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 9590...................9608100
AF169005.1 Hepatitis C virus subtype 2a isolate NDM59, complete genome 9637...................9655100
AF271632.1 Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome 9555...................9573100
AB030907.1 Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome 9591...................9609100
AJ278830.1 Hepatitis C virus genomic RNA for polyprotein gene 9547...................9565100
AB049088.1 Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 9553...................9571100
AB049089.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT109508...................9526100
AB049090.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149508...................9526100
AB049091.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149484...................9502100
AB049095.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT169522...................9540100
AB049101.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT229535...................9553100
AF333324.1 Hepatitis C virus type 1b polyprotein mRNA, complete cds 9524...................9542100
AB047639.1 Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome 9615...................9633100
AB047640.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 9611...................9629100
AB047641.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 9596...................9614100
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 9615...................9633100
AB047643.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 9578...................9596100
AB047644.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 9628...................9646100
AB047645.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 9620...................9638100
AF356827.1 Hepatitis C virus subtype 1b isolate HCV-S1, complete genome 9546...................9564100
AY045702.1 Hepatitis C virus isolate HCR6, complete genome 9548...................9566100
AF139594.2 Hepatitis C virus subtype 1b strain HCV-N, complete genome 9553...................9571100
AB080299.1 Hepatitis C virus genomic RNA, complete genome, isolate:M1LE 9524...................9542100
AY460204.1 Hepatitis C virus from Shanghai, complete genome 9514...................9532100
AY746460.1 Hepatitis C virus genotype 2a polyprotein gene, complete cds 9626...................9644100
D84263.2 Hepatitis C virus (isolate VN235) genomic RNA, complete genome 9552...................9570100
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 9538...................9556100
D84265.2 Hepatitis C virus (isolate VN004) genomic RNA, complete genome 9559...................9577100
AB191333.1 Hepatitis C virus genomic RNA, complete genome, strain:0 9524...................9542100
DQ071885.1 Hepatitis C virus subtype 1b polyprotein mRNA, complete cds 9542...................9560100
AB249644.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9496...................9514100
EF621489.1 Hepatitis C virus subtype 1a strain HC-TN, complete genome 9536...................9554100
EU363761.1 Recombinant Hepatitis C virus H77C/JFH1, complete genome 9603...................9621100
AB426117.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9496...................9514100
AB435162.2 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9558...................9576100
EU857431.1 Hepatitis C virus subtype 1b isolate Whu, complete genome 9540...................9558100
AB442219.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9524...................9542100
AB442220.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9524...................9542100
AB442221.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9524...................9542100
AB442222.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9527...................9545100
FN435993.1 Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN9550...................9568100
AB520610.1 Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC9535...................9553100
GU133617.1 Hepatitis C virus subtype 1b, complete genome 9583...................9601100
D84262.2 Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC9565...................9583100
AF177036.1 Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen9648...................9666100
AF009606.1 Hepatitis C virus subtype 1a polyprotein gene, complete cds 9583...................9601100
FN666428.2 Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol9530.................._954794
AJ132997.1 Hepatitis C virus, complete genome, isolate HCV-AD78P1 9470..........g........948894