../../tmp/servers/virsirnadb/1597062147
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi20261gtgcacacaatccagtgtg19
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 480...................498100
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 2325___....a.........__233868
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 1036______..t..........102463
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 1951__..t.c.tg.........193568
FJ445113.1 Human rhinovirus 8 strain ATCC VR-1118, complete genome 476...................494100
FJ445139.1 Human rhinovirus 54 isolate F05, complete genome 477...................495100
EF582386.1 Human rhinovirus C strain 025, complete genome 483_..................50094
NC_009996.1 Human rhinovirus C, complete genome 484_..................50194
NC_009996.1 Human rhinovirus C, complete genome 2823_..a..c..........__280873
AY751783.1 Human rhinovirus 39, complete genome 482_..................49994
FJ445170.1 Human rhinovirus 95 strain ATCC VR-1301, complete genome 477_..................49494
FJ445170.1 Human rhinovirus 95 strain ATCC VR-1301, complete genome 1929_______..g.........191857
DQ473497.1 Human rhinovirus 23, complete genome 401.a.................41994
DQ473506.1 Human rhinovirus 46, complete genome 479..........a........49794
DQ473506.1 Human rhinovirus 46, complete genome 2319_.a.c..a.........__233468
DQ473512.1 Human rhinovirus 30, complete genome 477.g.................49594
FJ445127.1 Human rhinovirus 32 strain ATCC VR-1142, complete genome 476.g.................49494
FJ445127.1 Human rhinovirus 32 strain ATCC VR-1142, complete genome 5242____..c.........___523157
FJ445133.1 Human rhinovirus 47 strain ATCC VR-1157, complete genome 479.....t.............49794
FJ445138.1 Human rhinovirus 54 strain ATCC VR-1164, complete genome 478.....t.............49694
FJ445140.1 Human rhinovirus 56 strain ATCC VR-1166, complete genome 477..........a........49594
FJ445157.1 Human rhinovirus 81 strain ATCC VR-1191, complete genome 481..........a........49994
FJ445158.1 Human rhinovirus 81 isolate F06, complete genome 481..........a........49994
FJ445159.1 Human rhinovirus 81 isolate F07, complete genome 481..........a........49994
FJ445173.1 Human rhinovirus 98 strain ATCC VR-1298, complete genome 477..........a........49594
FJ445177.1 Human rhinovirus 9 strain ATCC VR-489, complete genome 477.g.................49594
FJ445177.1 Human rhinovirus 9 strain ATCC VR-489, complete genome 2314___.c..a.........__232763
FJ445177.1 Human rhinovirus 9 strain ATCC VR-489, complete genome 1512_______..........__152152
FJ445179.1 Human rhinovirus 30 strain ATCC VR-1140, complete genome 471.g.................48994
GQ415051.1 Human rhinovirus A isolate hrv-A101, complete genome 485_.........a........50289
GQ415051.1 Human rhinovirus A isolate hrv-A101, complete genome 3332______...t.........334463
FJ445118.1 Human rhinovirus 18 strain ATCC VR-1128, complete genome 479.g...t.............49789
DQ473508.1 Human rhinovirus 28, complete genome 486_..t.............._50284
EF173419.1 Human rhinovirus 94, complete genome 480_...t............a.49784
EF173419.1 Human rhinovirus 94, complete genome 1223.........._________123252
FJ445117.1 Human rhinovirus 13 isolate F03, complete genome 484_...c............g.50184
FJ445117.1 Human rhinovirus 13 isolate F03, complete genome 5253_____.c..........__524257
FJ445119.1 Human rhinovirus 19 strain ATCC VR-1129, complete genome 481_...t............a.49884
FJ445119.1 Human rhinovirus 19 strain ATCC VR-1129, complete genome 1935_______..g.........192457
FJ445122.1 Human rhinovirus 22 strain ATCC VR-1132, complete genome 480_...t............a.49784
FJ445185.1 Human rhinovirus 94 strain ATCC VR-1295, complete genome 480_...t............a.49784
FJ445185.1 Human rhinovirus 94 strain ATCC VR-1295, complete genome 1223.........._________123252
DQ473489.1 Human rhinovirus 70, complete genome 492____.............._50573
EF173420.1 Human rhinovirus 17, complete genome 492____.............._50573
FJ445168.1 Human rhinovirus 91 strain ATCC VR-1292, complete genome 492____.............._50573
FJ445143.1 Human rhinovirus 60 strain ATCC VR-1473, complete genome 479.....tg.........a..49784
FJ445150.1 Human rhinovirus 68 strain ATCC VR-1178, complete genome 485...tg............__50178
FJ445169.1 Human rhinovirus 92 strain ATCC VR-1293, complete genome 498_____............._51068
DQ473493.1 Human rhinovirus 15, complete genome 481_____............._49368
DQ473493.1 Human rhinovirus 15, complete genome 1944__..t.c.tg.........192868
DQ473509.1 Human rhinovirus A, complete genome 487_.a.t............a.50478
FJ445160.1 Human rhinovirus 82 strain ATCC VR-1192, complete genome 481_.a.t............a.49878
DQ473504.1 Human rhinovirus 88, complete genome 487_.a.t............__50273
FJ445135.1 Human rhinovirus 50 strain ATCC VR-517, complete genome 2302_..a...a.........__231773
FJ445135.1 Human rhinovirus 50 strain ATCC VR-517, complete genome 1925_______..g.........191457
EF173418.1 Human rhinovirus 78, complete genome 2331___....a.........__234468
EF173418.1 Human rhinovirus 78, complete genome 3359_..........g..c.___337368
FJ445167.1 Human rhinovirus 90 strain ATCC VR-1291, complete genome 2316___....a.........__232968
FJ445183.1 Human rhinovirus 78 strain ATCC VR-1188, complete genome 2331___....a.........__234468
FJ445183.1 Human rhinovirus 78 strain ATCC VR-1188, complete genome 3359_..........g..c.___337368
DQ473488.1 Human rhinovirus 48, complete genome 497_____............__50863
FJ445153.1 Human rhinovirus 72 strain ATCC VR-1182, complete genome 502_____............__51363
DQ473494.1 Human rhinovirus 74, complete genome 482_____............__49363
DQ473510.1 Human rhinovirus 75, complete genome 489_____............__50063
DQ473502.1 Human rhinovirus 76, complete genome 482...tgt...........__49873
DQ473502.1 Human rhinovirus 76, complete genome 6777________.........._678652
FJ445182.1 Human rhinovirus 76 strain ATCC VR-1186, complete genome 482...tgt...........__49873
FJ445182.1 Human rhinovirus 76 strain ATCC VR-1186, complete genome 6776________.........._678552
FJ445137.1 Human rhinovirus 52 isolate F10, complete genome 1328___....tg........._134268
FJ445151.1 Human rhinovirus 69 strain ATCC VR-1179, complete genome 1324___....tg........._133868
EF173424.1 Human rhinovirus 52, complete genome 500______...........__51057
FJ445188.1 Human rhinovirus 52 strain ATCC VR-1162, complete genome 500______...........__51057
DQ473507.1 Human rhinovirus 53, complete genome 6445________...........645557
FJ445128.1 Human rhinovirus 33 strain ATCC VR-330, complete genome 487_____...........___49757
DQ473503.1 Human rhinovirus 7, complete genome 1958___.t.c..g.........194368
FJ445120.1 Human rhinovirus 20 strain ATCC VR-1130, complete genome 486...tgt..........___50168
FJ445176.1 Human rhinovirus 7 strain ATCC VR-1117, complete genome 1958___.t.c..g.........194368
M16248.1HRV89 Human rhinovirus type 89 (HRV89), complete genome 1533.g.g.........._____154663
M16248.1HRV89 Human rhinovirus type 89 (HRV89), complete genome 1957_______..g.........194657
FJ445114.1 Human rhinovirus 9 isolate F01, complete genome 2316___.c..g.........__232963
FJ445115.1 Human rhinovirus 9 isolate F02, complete genome 2315___.c..g.........__232863
FJ445165.1 Human rhinovirus 89 isolate F09, complete genome 1531.g.g.........._____154463
FJ445165.1 Human rhinovirus 89 isolate F09, complete genome 1955_______..g.........194457
FJ445165.1 Human rhinovirus 89 isolate F09, complete genome 4992______..........___498352
FJ445166.1 Human rhinovirus 89 isolate F08, complete genome 1533.g.g.........._____154663
FJ445166.1 Human rhinovirus 89 isolate F08, complete genome 1957_______..g.........194657
FJ445166.1 Human rhinovirus 89 isolate F08, complete genome 4994______..........___498552
FJ445184.1 Human rhinovirus 89 strain ATCC VR-1199, complete genome 1533.g.g.........._____154663
FJ445184.1 Human rhinovirus 89 strain ATCC VR-1199, complete genome 1957_______..g.........194657
NC_001617.1 Human rhinovirus 89, complete genome 1533.g.g.........._____154663
NC_001617.1 Human rhinovirus 89, complete genome 1957_______..g.........194657
DQ473486.1 Human rhinovirus 6, complete genome 2562..........g._______255157
DQ473487.1 Human rhinovirus 35, complete genome 5328_____.c..........__531757
FJ445164.1 Human rhinovirus 86 strain ATCC VR-1196, complete genome 1338______..........t._134957
FJ445187.1 Human rhinovirus 35 strain ATCC VR-1145, complete genome 5328_____.c..........__531757
D00239.1HRVACG Human rhinovirus 1B, complete genome 2330_____..a.........__234157
DQ473491.1 Human rhinovirus 41, complete genome 5255_____.c..........__524457
DQ473499.1 Human rhinovirus 44, complete genome 1948_______..g.........193757
DQ473500.1 Human rhinovirus 59, complete genome 1944_______..g.........193357
DQ473505.1 Human rhinovirus 36, complete genome 1955_______..g.........194457
DQ473505.1 Human rhinovirus 36, complete genome 1678___..........______168752
FJ445116.1 Human rhinovirus 13 strain ATCC VR-1123, complete genome 5252_____.c..........__524157
FJ445123.1 Human rhinovirus 25 strain ATCC VR-1135, complete genome 1948_______..g.........193757
FJ445125.1 Human rhinovirus 29 strain ATCC VR-1139, complete genome 1948_______..g.........193757
FJ445126.1 Human rhinovirus 31 strain ATCC VR-506, complete genome 1944_______..g.........193357
FJ445131.1 Human rhinovirus 43 strain ATCC VR-1153, complete genome 1937_______..g.........192657
FJ445131.1 Human rhinovirus 43 strain ATCC VR-1153, complete genome 4459_________..........446852
FJ445145.1 Human rhinovirus 62 strain ATCC VR-1172, complete genome 1953_______..g.........194257
FJ445146.1 Human rhinovirus 63 strain ATCC VR-1173, complete genome 1951_______..g.........194057
FJ445163.1 Human rhinovirus 85 strain ATCC VR-1195, complete genome 1950_______..g.........193957
EF186077.1 Human rhinovirus QPM polyprotein gene, complete cds 4888________.........._487952
DQ875932.2 Human rhinovirus C strain NY-074 polyprotein gene, complete cds 6370_________..........637952
GU219984.1 Human rhinovirus C strain HRV-C15 isolate W10, complete genome 3164.........._________317352
EF173415.1 Human rhinovirus 12, complete genome 3109____.........._____311852
EF173416.1 Human rhinovirus 24, complete genome 490______..........___49952
FJ445190.1 Human rhinovirus 24 strain ATCC VR-1134, complete genome 490______..........___49952