../../tmp/servers/virsirnadb/24863003
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12731gtgttgtaccagcactaca19
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 2565...................2583100
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 3296____..c..........__330863
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 2565...................2583100
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 3296____..c..........__330863
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 2565...................2583100
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 3296____..c..........__330863
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 2565...................2583100
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 2566...................2584100
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 3297____..c..........__330963
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 2565...................2583100
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 2565................g..258394
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 3296____.............__330868
AY697461.1 Human enterovirus 91 polyprotein gene, complete cds 2577...ag..............259589
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 2565..............t.g..258389
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 3296____..c..........__330863
AY302542.1 Human echovirus 16 strain Harrington complete genome 2762__...........t..___274968
U22521.1ETU22521 Human enterovirus 71 polyprotein gene, complete cds 2568_____...........t..258168
AB204852.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR2568_____...........t..258168
AB204853.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts2568_____...........t..258168
AB192877.1 Human enterovirus 90 genomic RNA, complete genome 2580_____..c...........259368
GU434678.1 Human enterovirus 71 strain EV71-Hubei-09-China, complete genome 2568_____...........t..258168
FM955278.1 Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA172365__............_____237663
AF114383.1 Coxsackievirus B5 strain Faulkner, complete genome 2570__............_____258163
X05690.1 Coxsackievirus B4 complete genome 2320..t.g..........g.a.230278
AY302555.1 Human echovirus 32 strain PR-10 complete genome 2312..t.g..........gt..229478
DQ480420.1 Human coxsackievirus B4 strain Tuscany, complete genome 2320..t.g..........g.a.230278
U16283.1E6U16283 Echovirus 6 lytic strain, complete genome 2318..t.g..........____230468
AF465517.1 Human echovirus 6 strain Charles, complete genome 2319..t.g..........____230568
AY302552.1 Human echovirus 29 strain JV-10 complete genome 2319..c.g..........____230568
AY302558.1 Human echovirus 6 strain D'Amori complete genome 2319..t.g..........____230568
AY843304.1 Human enterovirus 86 strain BAN00-10354, complete genome 2322..c.g..........____230868
X00595.1 Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab)) 1512______..........c..150063
AY184220.1 Human poliovirus 2 strain Sabin 2, complete genome 1512______..........c..150063
AY177685.1 Human poliovirus 2, complete genome 1512______..........c..150063
AY278549.1 Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome 1512______..........c..150063
AY278550.1 Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome 1512______..........c..150063
AY278551.1 Human poliovirus 2 isolate P2S/Mog66-4 (21043), complete genome 1512______..........c..150063
AY278552.1 Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome 1512______..........c..150063
AF448782.1 Human poliovirus 2 strain EGY88-074, complete genome 1512______..........c..150063
AY948201.1 Human poliovirus 2 isolate CHN1025 polyprotein gene, complete cds 1513______..........c..150163
DQ205099.1 Human poliovirus 2 clone S2R9, complete genome 1512______..........c..150063
DQ890385.1 Human poliovirus 2 strain NIE0210766, complete genome 1512______..........c..150063
DQ890386.1 Human poliovirus 2 strain NIE0110767, complete genome 1514______..........c..150263
DQ890387.1 Human poliovirus 2 strain USA9810768, complete genome 1512______..........c..150063
DQ890388.1 Human poliovirus 2 strain PER8310769, complete genome 1512______..........c..150063
FJ898290.1 Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl1512______..........c..150063
HM107832.1 Human poliovirus 2 isolate CHN1054, complete genome 1512______..........c..150063
HM107833.1 Human poliovirus 2 isolate CHN1078, complete genome 1512______..........c..150063
HM107834.1 Human poliovirus 2 isolate CHN3219, complete genome 1512______..........c..150063
HM107835.1 Human poliovirus 2 isolate CHN8316, complete genome 1512______..........c..150063
AY302543.1 Human echovirus 17 strain CHHE-29 complete genome 2324_..........c.._____233663
HM775882.1 Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome 3147______...........t.315963
AF546702.1 Human coxsackievirus A21 strain Kuykendall, complete genome 3893______...........__390357
AF465515.1 Human coxsackievirus A21 strain Kuykendall, complete genome 3893______...........__390357
AF111983.3 Human poliovirus 1 isolate CHN-Henan/91-3, complete genome 3932______...........__394257
AB205396.1 Human coxsackievirus A18 genomic RNA, complete genome, strain: CAM1972614_____...........___262457
DQ358078.1 Human coxsackievirus A20 serotype CAV20a, complete genome 3932______...........__394257
AY843297.1 Human enterovirus 79 strain USA/CA79-10384, complete genome 2522_____...........___253257
EU131776.1 Human enterovirus 71 strain N3340-TW-02, complete genome 4182___..........._____419257
AB575913.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1194112___..........._____412257
AB575914.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1704121___..........._____413157