../../tmp/servers/virsirnadb/601659490
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12651gttggagaaccaaatctca19
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 4243...................4261100
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 4243...................4261100
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 4243...................4261100
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 4243...................4261100
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 4244...................4262100
AY421766.1 Human coxsackievirus A8 strain Donovan, complete genome 4229.................._424694
FJ859058.1 Human poliovirus 1 isolate 10050, complete genome 4288.c.................430694
FJ859059.1 Human poliovirus 1 isolate 10086c, complete genome 4288.c.................430694
FJ859061.1 Human poliovirus 1 isolate 10092c, complete genome 4288.c.................430694
FJ859062.1 Human poliovirus 1 isolate 10094c, complete genome 4288.c.................430694
FJ859063.1 Human poliovirus 1 isolate 10095c, complete genome 4288.c.................430694
AY421769.1 Human coxsackievirus A14 strain G-14, complete genome 4250.........t.........426894
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 4243............g......426194
AB575935.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 4804187_................._420389
AB575936.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9614182_................._419889
AF499639.1 Human coxsackievirus A17 strain G12, complete genome 4305...............a.._432289
EF555645.1 Human enterovirus 102, complete genome 4285...............a.._430289
FJ859064.1 Human poliovirus 1 isolate 10097c, complete genome 4288.c................_430589
U22521.1ETU22521 Human enterovirus 71 polyprotein gene, complete cds 4241.............g...._425889
DQ452074.1 Human enterovirus 71 strain 804/NO/03, complete genome 4243............g....._426089
FJ172159.1 Human enterovirus 71 isolate NUH0075/SIN/08, complete genome 4203...............t.._422089
AB575942.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3694176...............t.._419389
X04468.1 Poliovirus type 3 strain 23127 complete genome 4283...............tg..430189
V01148.1 Genome of human poliovirus type 1 (Mahoney strain). (One of two versi4283.c....a............430189
V01150.1 Human poliovirus strain Sabin 1 complete genome, strain Sabin 1 4288.c....a............430689
D00625.1POL2CG1 Human poliovirus 2 genomic RNA, complete genome 4287...............tg..430589
M12197.1POL2LAN Poliovirus type 2 (Lansing strain), complete genome 4287...............tg..430589
AJ132960.1 Human poliovirus 1, complete genome. Isolated from faeces of immunode4289.c....a............430789
AJ416942.1 Human poliovirus 1 genomic RNA for polyprotein, strain CHAT 10A-11 4288.c....a............430689
AJ430385.1 Human poliovirus 1 genomic RNA for polyprotein gene, strain Cox 4288.c....a............430689
AY184219.1 Human poliovirus 1 strain Sabin 1, complete genome 4288.c....a............430689
AY238473.1 Human poliovirus 2 strain MEF-1 polyprotein gene, complete cds 4287...............tg..430589
AF538840.1 Human poliovirus 1 isolate TCDCE01-135, complete genome 4258.c....a............427689
AF538842.1 Human poliovirus 1 isolate TCDC01-330, complete genome 4280.c....a............429889
AF538843.1 Human poliovirus 1 isolate TCDC01-861, complete genome 4280.c....a............429889
AY928383.1 Human poliovirus 1 isolate d261-2002037607 polyprotein gene, complete4280.c....a............429889
AY928384.1 Human poliovirus 1 isolate d224-2002037606 polyprotein gene, complete4280.c....a............429889
AY928385.1 Human poliovirus 1 isolate d054-2002037604 polyprotein gene, complete4280.c....a............429889
AY928386.1 Human poliovirus 1 isolate d179-2002037605 polyprotein gene, complete4280.c....a............429889
AY928387.1 Human poliovirus 1 isolate d018-2002037602 polyprotein gene, complete4280.c....a............429889
EF682343.1 Human poliovirus 1 strain USA10774 polyprotein gene, complete cds 4262.c....a............428089
EF682344.1 Human poliovirus 1 strain USA10775 polyprotein gene, complete cds 4262.c....a............428089
EF682345.1 Human poliovirus 1 strain USA10773 polyprotein gene, complete cds 4262.c....a............428089
EF682346.1 Human poliovirus 1 strain USA10780 polyprotein gene, complete cds 4262.c....a............428089
EF682347.1 Human poliovirus 1 strain USA10781 polyprotein gene, complete cds 4262.c....a............428089
EF682348.1 Human poliovirus 1 strain USA10782 polyprotein gene, complete cds 4262.c....a............428089
EF682349.1 Human poliovirus 1 strain USA10771 polyprotein gene, complete cds 4262.c....a............428089
EF682350.1 Human poliovirus 1 strain USA10772 polyprotein gene, complete cds 4262.c....a............428089
EF682351.1 Human poliovirus 1 strain USA10778 polyprotein gene, complete cds 4262.c....a............428089
EF682352.1 Human poliovirus 1 strain USA10770 polyprotein gene, complete cds 4262.c....a............428089
EF682353.1 Human poliovirus 1 strain USA10777 polyprotein gene, complete cds 4262.c....a............428089
EF682354.1 Human poliovirus 1 strain USA10779 polyprotein gene, complete cds 4262.c....a............428089
EF682355.1 Human poliovirus 1 strain USA10776 polyprotein gene, complete cds 4262.c....a............428089
EF682356.1 Human poliovirus 1 strain USA10784, complete genome 4288.c....a............430689
EF682357.1 Human poliovirus 1 strain USA10785, complete genome 4288.c....a............430689
EF682358.1 Human poliovirus 1 strain USA10783, complete genome 4288.c....a............430689
EF682359.1 Human poliovirus 1 strain USA10786, complete genome 4288.c....a............430689
EU794953.1 Human poliovirus 1 isolate A21 polyprotein gene, complete cds 4240.c....a............425889
EU794954.1 Human poliovirus 1 isolate A49 polyprotein gene, complete cds 4240.c....a............425889
EU794955.1 Human poliovirus 1 isolate A63 polyprotein gene, complete cds 4240.c....a............425889
EU794956.1 Human poliovirus 1 isolate A84 polyprotein gene, complete cds 4240.c....a............425889
EU794957.1 Human poliovirus 1 isolate A88 polyprotein gene, complete cds 4240.c....a............425889
EU794958.1 Human poliovirus 1 isolate A91 polyprotein gene, complete cds 4240.c....a............425889
EU794959.1 Human poliovirus 1 isolate A102 polyprotein gene, complete cds 4240.c....a............425889
EU794960.1 Human poliovirus 1 isolate A105 polyprotein gene, complete cds 4240.c....a............425889
EU794961.1 Human poliovirus 1 isolate A118 polyprotein gene, complete cds 4240.c....a............425889
EU794962.1 Human poliovirus 1 isolate A199 polyprotein gene, complete cds 4240.c....a............425889
EU794963.1 Human poliovirus 1 isolate A449 polyprotein gene, complete cds 4240.c....a............425889
EU794964.1 Human poliovirus 1 isolate A649 polyprotein gene, complete cds 4240.c....a............425889
FJ769378.1 Human poliovirus 1 strain CHN8184/GZ/CHN/2004, complete genome 4288.c....a............430689
FJ769379.1 Human poliovirus 1 strain CHN8229-1/GZ/CHN/2004, complete genome 4288.c....a............430689
FJ769380.1 Human poliovirus 1 strain CHN8229-2/GZ/CHN/2004, complete genome 4288.c....a............430689
FJ769381.1 Human poliovirus 1 strain CHN8229-3/GZ/CHN/2004, complete genome 4288.c....a............430689
FJ769382.1 Human poliovirus 1 strain CHN8233c/GZ/CHN/2004, complete genome 4288.c....a............430689
FJ769383.1 Human poliovirus 1 strain CHN8225c/GZ/CHN/2004, complete genome 4288.c....a............430689
FJ769384.1 Human poliovirus 1 strain CHN8248c/GZ/CHN/2004, complete genome 4288.c....a............430689
FJ769385.1 Human poliovirus 1 strain CHN8264c/GZ/CHN/2004, complete genome 4288.c....a............430689
FJ859060.1 Human poliovirus 1 isolate 10091c, complete genome 4288.c.............t...430689
FJ914252.2 Human poliovirus 3 strain SWI10947, complete genome 4283.c..............g..430189
DQ341367.1 Human enterovirus 71 isolate MY821-3-SAR-97, complete genome 4244.........t..g......426289
DQ341368.1 Human enterovirus 71 isolate MY104-9-SAR-97, complete genome 4244.........t..g......426289
AM396588.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/4235.........t..g......425389
EU364841.1 Human enterovirus 71 strain 26M/AUS/4/99, complete genome 4245.........t..g......426389
EU376004.1 Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome 4245.........t..g......426389
EU376005.1 Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome 4245.........t..g......426389
AB469182.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E4243.........t..g......426189
AB469183.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: EV714978.........t..g......499689
AB550334.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o4243.........t..g......426189
AB550335.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L4243.........t..g......426189
AF119795.2 Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds 4242_..............t.._425884
AF136379.1 Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds 4244_..............t.._426084
AF119796.3 Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds 4242_..............t.._425884
AF176044.1 Enterovirus 71 polyprotein gene, complete cds 4245_..............t.._426184
AF304457.1 Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds 4244_..............t.._426084
AF304458.1 Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds 4244_..............t.._426084
AF304459.1 Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds 4244_..............t.._426084
DQ060149.1 Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome 4244_..............t.._426084
DQ341355.1 Human enterovirus 71 isolate 06-KOR-00, complete genome 4243_..............t.._425984
DQ341356.1 Human enterovirus 71 isolate 03-KOR-00, complete genome 4243_..............t.._425984
DQ341357.1 Human enterovirus 71 isolate 7F-AUS-6-99, complete genome 4243_..............t.._425984
DQ341358.1 Human enterovirus 71 isolate S40221-SAR-00, complete genome 4243_...........g....._425984
DQ341359.1 Human enterovirus 71 isolate S10862-SAR-98, complete genome 4243_.....a..........._425984
DQ341360.1 Human enterovirus 71 isolate J115-MAL-01, complete genome 4242_...........g....._425884
DQ341361.1 Human enterovirus 71 isolate 1M-AUS-12-00, complete genome 4243_...........g....._425984
DQ381846.1 Human enterovirus 71 strain 6F/AUS/6/99, complete genome 4243_..............t.._425984
AM396584.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P4242_..............t.._425884
AM396585.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P4242_..............t.._425884
EU414334.1 Human enterovirus 71 strain PLday4-CH-06, complete genome 4242_...........g....._425884
EU414335.1 Human enterovirus 71 strain PLday1-CH-06, complete genome 4242_...........g....._425884
AB550340.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org4243_...........g....._425984
AB550341.1 Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS4243_...........g....._425984
AB575911.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1004181__.a...............419784
AB575912.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1084195__.a...............421184
AB575937.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1414155_...........g....._417184
AB575939.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 3654174_..............t.._419084
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 4245__.............t...426184
HQ423142.1 Human enterovirus 71 strain KMM/09, complete genome 4242__..........g......425884
HQ423143.1 Human enterovirus 71 strain KM186/09, complete genome 4242__..........g......425884
AB205395.1 Human enterovirus C genomic RNA, complete genome, strain: Cambodia-024279...a............g._429684
AY421764.1 Human coxsackievirus A6 strain Gdula, complete genome 4267...a..a..........._428484
AB204852.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR4241............gg...._425884
AB204853.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts4241............gg...._425884
GU434678.1 Human enterovirus 71 strain EV71-Hubei-09-China, complete genome 4241............gg...._425884
AB575941.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2484181.........t.....t.._419884
AB575948.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1014199.........t.....t.._421684
AY421765.1 Human coxsackievirus A7 strain Parker, complete genome 4239__....a..........._425478
EF667344.1 Human enterovirus 92 strain RJG7, complete genome 4197.c..............___421278
AJ293918.1 Human poliovirus type 3 complete genome, live-attenuated strain USOL-4284.c.a.....t.........430284
AF538841.1 Human poliovirus 1 isolate TCDC01-113, complete genome 4288.c....a..t.........430684
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 4245__.a...........t...426178
AB550332.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org 4243_...........g..t.._425978
AB550333.1 Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 4243_...........g..t.._425978
AF405666.1 Human poliovirus 1 isolate HAI01007, complete genome 4288.........t..g..a.._430578
FJ439769.1 Human enterovirus 71 strain Fuyang-0805, complete genome 2705.........at.g....._272278
FJ606447.1 Human enterovirus 71 strain BJ08-Z004-3, complete genome 2705.........at.g....._272278
HM053669.1 Human enterovirus 71 strain BJ293, complete genome 2705.........at.g....._272278
HQ456313.1 Human enterovirus A strain GZ2010-95, complete genome 2705.........at.g....._272278
AB205396.1 Human coxsackievirus A18 genomic RNA, complete genome, strain: CAM1974308.........t..g...___432373
AM084225.1 Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,4287.c..........g..____430168
FM955278.1 Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA174305.c.a...........____431968
HM002489.1 Human enterovirus 71 strain BJ398, complete genome 6695____.........t...a.668168
HQ891923.1 Human enterovirus 71 strain Shanghai 27-2009, complete genome 6695____.........t...a.668168
HQ891924.1 Human enterovirus 71 strain Shanghai 28-2009, complete genome 6695____.........t...a.668168
HQ891927.1 Human enterovirus 71 strain Shanghai 64-2009, complete genome 6695____.........t...a.668168
HQ891928.1 Human enterovirus 71 strain Shanghai 117-2009, complete genome 6695____.........t...a.668168
HQ456307.1 Human enterovirus A strain GZ2010-120, complete genome 6694____.........t...a.668068