../../tmp/servers/virsirnadb/1664896356
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi21851taattataatactaccgcc19
AB074917.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JKK-S6848...................6866100
AB220972.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6864...................6882100
AB220973.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6864...................6882100
AB220978.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6864...................6882100
EF570133.1 Hepatitis E virus isolate SH-SW-zs1, complete genome 6866...................6884100
AB220975.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6864.................._688194
AB193177.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Sap01C 6865...............t...688394
AB220976.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6864...............t...688294
AB220977.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6864...............t...688294
AB220979.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6864...............t...688294
DQ279091.2 Swine hepatitis E virus isolate swDQ, complete genome 6859...............t...687794
EU676172.2 Swine hepatitis E virus isolate swGX40, complete genome 6858...............t...687694
AB291959.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JTC-K6824...............t...684294
AB291965.1 Hepatitis E virus genomic RNA, complete genome, isolate: HRC-HE14C 6864...............t...688294
AB291966.1 Hepatitis E virus genomic RNA, complete genome, isolate: JST-KitAsa046864...............t...688294
AB291967.1 Hepatitis E virus genomic RNA, complete genome, isolate: JKO-Aba-FH066864...............t...688294
AB291968.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMM-Aba06C 6864...............t...688294
AB480825.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6864.................t.688294
AF060669.1 Hepatitis E virus strain HEV-US2 polyprotein (ORF1), (ORF3), and caps6874_................._689089
AB074918.2 Hepatitis E virus genomic RNA, complete genome, isolate: JKN-Sap 6866...............t.._688389
AB074920.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JMY-H6850...............t.._686789
AB089824.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA10 6866...............t.._688389
AB197674.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYI-ChiSai016861...............t.._687889
FJ426404.1 Swine hepatitis E virus isolate swKOR-2, complete genome 6843...............t.._686089
AB291961.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMH-Osa04C 6852...............t.._686989
AB481228.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-M6866...............t.._688389
FJ763142.1 Hepatitis E virus isolate KNIH-hHEV4, complete genome 6861...............t.._687889
GU188851.1 Swine hepatitis E virus isolate WH09, complete genome 6864...............t.._688189
HQ634346.1 Hepatitis E virus strain TW6196E, complete genome 6862...............t.._687989
AB080575.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JI4 6795.........c..c......681389
AB091395.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSN-S6848............c..t...686689
AB097811.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJ13-6864............c..t...688289
AB097812.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA1 6864............c..t...688289
AB099347.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JK4 6864............c..t...688289
AB189071.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JDEER6832.........c..a......685089
AB189072.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6823.........c..a......684189
AB189073.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6823.........c..a......684189
AB189074.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6823.........c..a......684189
AB189075.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6823.........c..a......684189
AB200239.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSN-Sap-FH026865............c..t...688389
AB193176.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSF-Tot03C 6865............c..t...688389
AB193178.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Nii02L 6839............c..t...685789
AB220971.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6864............c..t...688289
AB369690.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E6850.........c.....t...686889
GU937805.1 Hepatitis E virus isolate ch-bj-n1, complete genome 6908......c..c.........692689
AY230202.1 Hepatitis E virus from Morocco, complete genome 6822_..............t.._683884
AB197673.1 Hepatitis E virus genomic RNA, complete genome, isolate: JKO-ChiSai986863_..............t.._687984
AB220974.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6865_..............t.._688184
AB253420.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:HEVN2 6840_..............t.._685684
X98292.1 Hepatitis E virus, complete genome 6822............c..t.._683984
D11093.1HPEUIGH Hepatitis E virus complete genome sequence 6823............c..t.._684084
D11093.1HPEUIGH Hepatitis E virus complete genome sequence 6828.........ggg....___681368
X99441.1 Hepatitis E virus ORF1, ORF2 & ORF3 6823............c..t.._684084
X99441.1 Hepatitis E virus ORF1, ORF2 & ORF3 2307___..c.gg..........232268
X99441.1 Hepatitis E virus ORF1, ORF2 & ORF3 6828.........ggg....___681368
AF082843.1 Swine hepatitis E virus nonstructural polyprotein and putative capsid6847............c..t.._686484
AJ272108.1 Hepatitis E virus (genotype 4) complete genome sequence 6858.........c.....t.._687584
AF185822.1 Hepatitis E virus nonstructural polyprotein gene, partial cds; struct6772............c..t.._678984
AF185822.1 Hepatitis E virus nonstructural polyprotein gene, partial cds; struct6777.........ggg....___676268
AP003430.1 Hepatitis E virus genomic RNA, complete genome, isolate: JRA1 6849............a..t.._686684
AB108537.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:CCC2206845...c...........t.._686284
AY204877.1 Hepatitis E virus strain T3 from Chad polyprotein gene, partial cds; 6782............c..t.._679984
AY204877.1 Hepatitis E virus strain T3 from Chad polyprotein gene, partial cds; 6787.........ggg....___677268
AY575857.1 Hepatitis E virus clone pSHEV-1, complete genome 6864............c..t.._688184
AY575858.1 Hepatitis E virus clone pSHEV-2, complete genome 6864............c..t.._688184
AY575859.1 Hepatitis E virus clone pSHEV-3, complete genome 6864............c..t.._688184
AY723745.1 Hepatitis E virus isolate IND-SW-00-01, complete genome 6864..........g....t.._688184
AB222182.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJSG1 6848............a..t.._686584
EU375463.1 Hepatitis E virus isolate Thai-swHEV07, complete genome 6852............c..t.._686984
AB369688.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E6841............c..t.._685884
AB369689.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E6828............a..t.._684584
FJ457024.1 Hepatitis E virus isolate HEV-H from India, complete genome 6823............c..t.._684084
AB291963.1 Hepatitis E virus genomic RNA, complete genome, isolate: JRM-Toy05C 6848............a..t.._686584
FJ653660.1 Hepatitis E virus isolate CU001, complete genome 6835.........c.....t.._685284
AB591734.1 Hepatitis E virus genomic RNA, complete genome, strain: JMNG36-Oki08 6860.........c.....t.._687784
DQ450072.1 Hepatitis E virus isolate swCH31, complete genome 6861.........c..c..t...687984
AB481227.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-H6864.........c..c..t...688284
AB074915.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JAK-S6849_...........c..t.._686578
AB091394.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JJT-K6831_...........a..t.._684778
NC_001434.1 Hepatitis E virus, complete genome 6799.........c..c..t.._681678
NC_001434.1 Hepatitis E virus, complete genome 6804.........ggg....___678968
D11092.1HPECG Hepatitis E virus genomic RNA, complete genome 6823.........c..c..t.._684078
D11092.1HPECG Hepatitis E virus genomic RNA, complete genome 6828.........ggg....___681368
D10330.1HPEHEV Hepatitis E virus genomic RNA 6823.........c..c..t.._684078
D10330.1HPEHEV Hepatitis E virus genomic RNA 6828.........ggg....___681368
M80581.1HPEA Hepatitis E Virus, complete cds 6793.........c..c..t.._681078
M80581.1HPEA Hepatitis E Virus, complete cds 6798.........ggg....___678368
M73218.1HPESVP Hepatitis E structural and nonstructural protein mRNA, complete6823.........c..c..t.._684078
M73218.1HPESVP Hepatitis E structural and nonstructural protein mRNA, complete6828.........ggg....___681368
L25595.1HPEORFS Hepatitis E virus ORFs 1-3 6822.........c..c..t.._683978
L25595.1HPEORFS Hepatitis E virus ORFs 1-3 6827.........ggg....___681268
M94177.1HPCEGENOM Hepataitis E virus complete genome 6823.........c..c..t.._684078
M94177.1HPCEGENOM Hepataitis E virus complete genome 6828.........ggg....___681368
L25547.1HPEGENA Hepatitis E virus unknown genes 6822.........c..c..t.._683978
L25547.1HPEGENA Hepatitis E virus unknown genes 6827.........ggg....___681268
AF444002.1 Hepatitis E virus clone pSK-HEV-2, complete genome 6821.........c..c..t.._683878
AF444002.1 Hepatitis E virus clone pSK-HEV-2, complete genome 6826.........ggg....___681168
AF444003.1 Hepatitis E virus clone pSK-HEV-3, complete genome 6821.........c..c..t.._683878
AF444003.1 Hepatitis E virus clone pSK-HEV-3, complete genome 6826.........ggg....___681168
AB290312.1 Hepatitis E virus genomic RNA, complete genome, clone: swMN06-A1288 6848.........c..g..a.._686578
EU360977.1 Hepatitis E virus isolate swX07-E1, complete genome 6855.........c..c..t.._687278
AB291962.1 Hepatitis E virus genomic RNA, complete genome, isolate: JHK-Toy04C 6848.........c..a..t.._686578
AB481226.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-E6851.........c..c..t.._686878
AB481226.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-E3834_________..........384352
GU206559.1 Hepatitis E virus isolate bjsw1, complete genome 6864.........c..c..t.._688178
GU361892.1 Swine hepatitis E virus strain hb-3, complete genome 6864.........c..c..t.._688178
AF051830.1 Hepatitis E virus strain TK15/92, complete genome 6828.........ggg....___681368
AF051830.1 Hepatitis E virus strain TK15/92, complete genome 2313_________..........232252
AF076239.3 Hepatitis E virus from Hyderabad, India, complete genome 6828.........ggg....___681368
AF459438.1 Hepatitis E virus from North India, complete genome 6825.........ggg....___681068
DQ459342.1 Hepatitis E virus from India, complete genome 6828.........ggg....___681368
AB248521.1 Hepatitis E virus genomic RNA, complete genome, isolate: swJ8-5 3834_________..........384352