../../tmp/servers/virsirnadb/2737054
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi19711tacacctccaccaaaacat19
D28917.1HPCK3A Hepatitis C virus (isolate HCV-K3a/650) genomic RNA, complete g2426...................2444100
AF046866.1 Hepatitis C virus subtype 3a strain CB polyprotein gene, complete cds2426...................2444100
AB031663.1 Hepatitis C virus (isolate VAT96) genomic RNA, complete genome 2422...................2440100
AY587845.1 Hepatitis C virus strain RF1_2k/1b, N687 polyprotein gene, complete c2349...................2367100
DQ418786.1 Hepatitis C virus subtype 4d isolate 03-18 polyprotein gene, complete2300...................2318100
DQ437509.2 Hepatitis C virus isolate 452 polyprotein gene, partial cds 2087...................2105100
FJ821465.1 Hepatitis C virus strain M21-2k/1b, complete genome 2396...................2414100
GQ275355.1 Hepatitis C virus subtype 3a, complete genome 2435...................2453100
AB559564.1 Hepatitis C virus HCV gene for hepatitis C virus polyprotein, complet2422...................2440100
D17763.1HPCEGS Hepatitis C virus (isolate NZL1) genomic RNA, complete genome 2426...................2444100
D10988.1HPCJ8G Hepatitis C virus genome 2422.g.................244094
D00944.1HPCPOLP Hepatitis C virus genomic RNA for polyprotein, complete cds 2421.c.................243994
X76918.1 Hepatitis C virus genes for core, envelope and NS1 proteins 2385..........t........240394
D49374.1HPCFG Hepatitis C virus (isolate Tr Kj) genomic RNA, complete genome 2432.............g.....245094
AF169002.1 Hepatitis C virus subtype 2a isolate NDM228, complete genome 2421.c.................243994
AF169003.1 Hepatitis C virus subtype 2a isolate G2aK1, complete genome 2418.c.................243694
AF238483.1 Hepatitis C virus subtype 2a strain MD2a-4, complete genome 2387.c.................240594
AF238484.1 Hepatitis C virus subtype 2a strain MD2a-5, complete genome 2387.c.................240594
AF238486.1 Hepatitis C virus subtype 2b strain MD2b-1, complete genome 2385.g.................240394
AB047641.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 2421.c.................243994
AB047643.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 2418.c.................243694
AF511950.1 Hepatitis C virus isolate XF224 polyprotein-like gene, complete seque2382.c.................240094
AY232730.1 Hepatitis C virus clone MD2b1-1 polyprotein mRNA, complete cds 2385.g.................240394
AY232731.1 Hepatitis C virus clone MD2b1-2 polyprotein mRNA, complete cds 2385.g.................240394
AY232732.1 Hepatitis C virus clone MD2b2-1 polyprotein mRNA, complete cds 2385.g.................240394
AY232733.1 Hepatitis C virus clone MD2b2-2 polyprotein mRNA, complete cds 2385.g.................240394
AY232734.1 Hepatitis C virus clone MD2b3-1 polyprotein mRNA, complete cds 2385.g.................240394
AY232735.1 Hepatitis C virus clone MD2b3-2 polyprotein mRNA, complete cds 2385.g.................240394
AY232736.1 Hepatitis C virus clone MD2b4-1 polyprotein mRNA, complete cds 2385.g.................240394
AY232737.1 Hepatitis C virus clone MD2b4-2 polyprotein mRNA, complete cds 2385.g.................240394
AY232738.1 Hepatitis C virus clone MD2b5-1 polyprotein mRNA, complete cds 2385.g.................240394
AY232739.1 Hepatitis C virus clone MD2b5-2 polyprotein mRNA, complete cds 2385.g.................240394
AY232740.1 Hepatitis C virus clone MD2b6-1 polyprotein mRNA, complete cds 2385.g.................240394
AY232741.1 Hepatitis C virus clone MD2b6-2 polyprotein mRNA, complete cds 2385.g.................240394
AY232742.1 Hepatitis C virus clone MD2b7-1 polyprotein mRNA, complete cds 2385.g.................240394
AY232743.1 Hepatitis C virus clone MD2b7-2 polyprotein mRNA, complete cds 2385.g.................240394
AY232746.1 Hepatitis C virus clone MD2b9-1 polyprotein mRNA, complete cds 2385.g.................240394
AY232747.1 Hepatitis C virus clone MD2b9-2 polyprotein mRNA, complete cds 2385.g.................240394
AY232748.1 Hepatitis C virus clone MD2b10-1 polyprotein mRNA, complete cds 2385.g.................240394
AY232749.1 Hepatitis C virus clone MD2b10-2 polyprotein mRNA, complete cds 2385.g.................240394
AY746460.1 Hepatitis C virus genotype 2a polyprotein gene, complete cds 2424.c.................244294
DQ516084.1 Hepatitis C virus subtype 4a isolate 25 polyprotein gene, complete cd2348.c.................236694
DQ988075.1 Hepatitis C virus isolate Eg4 polyprotein gene, partial cds 2328.c.................234694
DQ988077.1 Hepatitis C virus isolate Eg9 polyprotein gene, partial cds 2329.c.................234794
EF621489.1 Hepatitis C virus subtype 1a strain HC-TN, complete genome 2410.c.................242894
EF407452.1 Hepatitis C virus isolate 2005 polyprotein gene, complete cds 2341.t.................235994
EU362879.1 Hepatitis C virus isolate 2005_FU24 polyprotein (pol) gene, partial c2369.t.................238794
EU155298.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V334/2002, complet2340.c.................235894
EU155306.2 Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V352/2002, complet2358.c.................237694
EU155353.2 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V267/2005, complet2328.c.................234694
EU569723.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V13/2005, complete2329.c.................234794
EU255929.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V233/2004, complet2336.c.................235494
EU255932.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V111/2005, complet2336.c.................235494
EU255935.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V462/2007, complet2340.c.................235894
EU255958.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V265/2005, complet2336.t.................235494
EU256007.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V464/2006, complet2326.c.................234494
EU256043.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V3/2005, complete 2305.c.................232394
EU256051.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V4/2005, complete 2332.c.................235094
EU256052.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V403/2006, complet2335.c.................235394
EU255992.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V213/1992, complet2331.c.................234994
FJ024276.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1710/2007, comple2302.c.................232094
EU643835.1 Hepatitis C virus isolate HCV-6-D177 polyprotein gene, complete cds 2146.g.................216494
FJ462439.1 Hepatitis C virus isolate QC384, complete genome 2409.c.................242794
FJ462440.1 Hepatitis C virus isolate QC93, complete genome 2410.c.................242894
EU862831.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V400/2006, complet2328.c.................234694
EU862836.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V244/2003, complet2336.c.................235494
HM777359.1 Hepatitis C virus isolate C1292 genotype 2j, complete genome 2341.............g.....235994
AF177036.1 Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen2421.c.................243994
FN666428.2 Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol2394.............g...._241189
D10749.1HPCHCJ1 Hepatitis C virus genomic RNA, complete genome, isolate: HC-J12410.c...........g.....242889
M67463.1HPCCGAA Hepatitis C virus subtype 1a, complete genome 2410.c...........g.....242889
M62321.1HPCPLYPRE Hepatitis C virus subtype 1a, complete genome 2410.c...........g.....242889
D50482.1HPCK1R3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R3), complete g2398.c...........g.....241689
D50484.1HPCK1S3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S3), complete g2398.c...........g.....241689
D63821.1HPCJK049E1 Hepatitis C virus (isolate JK049) genomic RNA, complete gen2423....t...........t..244189
D50409.1 Hepatitis C virus (isolate BEBE1) genomic RNA, complete genome 2421.g..t..............243989
AF011751.1 Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds 2410.c...........g.....242889
AF011752.1 Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds 2410.c...........g.....242889
AF011753.1 Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds 2410.c...........g.....242889
U89019.1HCU89019 Hepatitis C virus subtype 1b, complete genome 2404.c...........g.....242289
D89815.1 Hepatitis C virus genomic RNA, complete sequence 2410.c...........g.....242889
AF165053.1 Hepatitis C virus subtype 1b strain MD5-1, complete genome 2398.c...........g.....241689
AF165054.1 Hepatitis C virus subtype 1b strain MD5-2, complete genome 2398.c...........g.....241689
AF165055.1 Hepatitis C virus subtype 1b strain MD6-1, complete genome 2407.c...........g.....242589
AF165056.1 Hepatitis C virus subtype 1b strain MD6-2, complete genome 2407.c...........g.....242589
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 2421.t..............t..243989
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 1813______............_182463
AF238481.1 Hepatitis C virus subtype 2a strain MD2a-1, complete genome 2387.c..............t..240589
AF238485.1 Hepatitis C virus subtype 2a strain MD2a-7, complete genome 2387.c..............t..240589
AF207773.1 Hepatitis C virus subtype 1b strain MD32, complete genome 2398.c...........g.....241689
AF271632.1 Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome 2410.c...........g.....242889
AB030907.1 Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome 2422.g.....t...........244089
AJ278830.1 Hepatitis C virus genomic RNA for polyprotein gene 2410.c...........g.....242889
AF290978.1 Hepatitis C virus subtype 1a isolate colonel, complete genome 2398.c...........g.....241689
AB049092.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT142379.t...........g.....239789
AB049096.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT192379.c..t..............239789
AB047640.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 2421.c..............t..243989
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 2421.t..............t..243989
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 1813______............_182463
AB047644.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 2421.t..............t..243989
AB047645.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 2418.c..............t..243689
AF511948.1 Hepatitis C virus isolate XF222 polyprotein-like gene, complete seque2410.c...........g.....242889
AF511949.1 Hepatitis C virus isolate XF223 polyprotein-like gene, complete seque2410.c...........g.....242889
AY232744.1 Hepatitis C virus clone MD2b8-1 polyprotein mRNA, complete cds 2385.g...........g.....240389
AY232745.1 Hepatitis C virus clone MD2b8-2 polyprotein mRNA, complete cds 2385.g...........g.....240389
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 2413.c...........g.....243189
AB191333.1 Hepatitis C virus genomic RNA, complete genome, strain:0 2410.c...........g.....242889
DQ155561.1 Hepatitis C virus (isolate D54) polyprotein gene, partial cds 2394.c...........g.....241289
DQ418782.1 Hepatitis C virus subtype 4a isolate 01-09 polyprotein gene, complete2326.c..............t..234489
DQ418787.1 Hepatitis C virus subtype 4a isolate F753 polyprotein gene, complete 2331.c..............t..234989
DQ516083.1 Hepatitis C virus subtype 4d isolate 24 polyprotein gene, complete cd2345.t...........g.....236389
DQ988074.1 Hepatitis C virus isolate Eg3 polyprotein gene, partial cds 2325.c..............t..234389
DQ988078.1 Hepatitis C virus isolate Eg10 polyprotein gene, partial cds 2324.c..............t..234289
DQ988079.1 Hepatitis C virus isolate Eg12 polyprotein gene, partial cds 2328.c..............t..234689
EF032883.1 Hepatitis C virus subtype 1a isolate 03-32_P1_10.16.03 polyprotein ge2332.c...........g.....235089
EF032884.1 Hepatitis C virus subtype 1a isolate 03-32_P2_5.14.04 polyprotein gen2311.c...........g.....232989
EF032885.1 Hepatitis C virus subtype 1a isolate 03-32_P4_11.5.05 polyprotein gen2331.c...........g.....234989
EF032886.1 Hepatitis C virus subtype 1a isolate BR601 polyprotein gene, complete2337.c...........g.....235589
EF032887.1 Hepatitis C virus subtype 1a isolate BR554_P1_5.23.03 polyprotein gen2344.c...........g.....236289
EF032888.1 Hepatitis C virus subtype 1a isolate BR554_P10_10.21.03 polyprotein g2332.c...........g.....235089
EF032889.1 Hepatitis C virus subtype 1a isolate BR554_P16_6.24.04 polyprotein ge2316.c...........g.....233489
EF032890.1 Hepatitis C virus subtype 1a isolate BR554_P17_10.21.04 polyprotein g2330.c...........g.....234889
EF032900.1 Hepatitis C virus subtype 1a isolate BR111_P5_4.30.03 polyprotein gen2330.c...........g.....234889
EF407413.1 Hepatitis C virus isolate 5012 polyprotein gene, complete cds 2357.c...........g.....237589
EF407414.1 Hepatitis C virus isolate 7018 polyprotein gene, complete cds 2313.c...........g.....233189
EF407415.1 Hepatitis C virus isolate 3018 polyprotein gene, complete cds 2360.c...........g.....237889