../../tmp/servers/virsirnadb/228397775
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi20401taccaacacatgctgaccc19
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 5265...................5283100
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 809__.........c..t.a._79468
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 3623...at........._____363663
L24917.1HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS 1817_______..........__180852
FJ445129.1 Human rhinovirus 40 strain ATCC VR-341, complete genome 5270...................5288100
FJ445135.1 Human rhinovirus 50 strain ATCC VR-517, complete genome 5250...................5268100
NC_009996.1 Human rhinovirus C, complete genome 5228................a..524694
DQ473498.1 Human rhinovirus 10, complete genome 5269.............a.....528794
DQ473498.1 Human rhinovirus 10, complete genome 2258_______..........a.224757
DQ473500.1 Human rhinovirus 59, complete genome 5266.............c.....528494
DQ473500.1 Human rhinovirus 59, complete genome 3624...at........._____363763
DQ473509.1 Human rhinovirus A, complete genome 5266................t..528494
DQ473509.1 Human rhinovirus A, complete genome 5211..a........._______520057
EF173417.1 Human rhinovirus 64, complete genome 5263....c..............528194
FJ445118.1 Human rhinovirus 18 strain ATCC VR-1128, complete genome 5251................t..526994
FJ445122.1 Human rhinovirus 22 strain ATCC VR-1132, complete genome 5263................t..528194
FJ445125.1 Human rhinovirus 29 strain ATCC VR-1139, complete genome 5255.............a.....527394
FJ445131.1 Human rhinovirus 43 strain ATCC VR-1153, complete genome 5268....t..............528694
FJ445143.1 Human rhinovirus 60 strain ATCC VR-1473, complete genome 5271.............a.....528994
FJ445145.1 Human rhinovirus 62 strain ATCC VR-1172, complete genome 5263.............a.....528194
FJ445146.1 Human rhinovirus 63 strain ATCC VR-1173, complete genome 5273.............a.....529194
FJ445148.1 Human rhinovirus 66 strain ATCC VR-1176, complete genome 5271................t..528994
FJ445154.1 Human rhinovirus 77 strain ATCC VR-1187, complete genome 5268.............a.....528694
FJ445157.1 Human rhinovirus 81 strain ATCC VR-1191, complete genome 5257................t..527594
FJ445157.1 Human rhinovirus 81 strain ATCC VR-1191, complete genome 4751___..........a..a._476568
FJ445157.1 Human rhinovirus 81 strain ATCC VR-1191, complete genome 3615...at........._____362863
FJ445158.1 Human rhinovirus 81 isolate F06, complete genome 5257................t..527594
FJ445158.1 Human rhinovirus 81 isolate F06, complete genome 3615...at........._____362863
FJ445159.1 Human rhinovirus 81 isolate F07, complete genome 5257................t..527594
FJ445159.1 Human rhinovirus 81 isolate F07, complete genome 3615...at........._____362863
FJ445163.1 Human rhinovirus 85 strain ATCC VR-1195, complete genome 5272................t..529094
FJ445173.1 Human rhinovirus 98 strain ATCC VR-1298, complete genome 5265.............a.....528394
FJ445178.1 Human rhinovirus 10 strain ATCC VR-1120, complete genome 5269.............a.....528794
FJ445178.1 Human rhinovirus 10 strain ATCC VR-1120, complete genome 2258_______..........a.224757
FJ445181.1 Human rhinovirus 64 strain ATCC VR-1174, complete genome 5263....c..............528194
DQ473506.1 Human rhinovirus 46, complete genome 5288................___530384
DQ473506.1 Human rhinovirus 46, complete genome 975_..........c.a..___98968
FJ445120.1 Human rhinovirus 20 strain ATCC VR-1130, complete genome 5303................___531884
X02316.1 Human rhinovirus 2, complete sequence 5241.............a..t..525989
D00239.1HRVACG Human rhinovirus 1B, complete genome 5274.t..............t..529289
M16248.1HRV89 Human rhinovirus type 89 (HRV89), complete genome 5291.t.........t.......530989
DQ473491.1 Human rhinovirus 41, complete genome 5279.c.....t...........529789
DQ473491.1 Human rhinovirus 41, complete genome 3637...at........._____365063
DQ473492.1 Human rhinovirus 73, complete genome 5276....c...........t..529489
DQ473495.1 Human rhinovirus 38, complete genome 5268.............a..t..528689
DQ473496.1 Human rhinovirus 49, complete genome 5243.............a..t..526189
DQ473499.1 Human rhinovirus 44, complete genome 5255.............a..t..527389
DQ473499.1 Human rhinovirus 44, complete genome 6935____.........._____692652
DQ473501.1 Human rhinovirus 34, complete genome 5251.g...........a.....526989
DQ473502.1 Human rhinovirus 76, complete genome 5265.............a..t..528389
DQ473502.1 Human rhinovirus 76, complete genome 3623...at........._____363663
DQ473512.1 Human rhinovirus 30, complete genome 5236..........c.....t..525489
EF173416.1 Human rhinovirus 24, complete genome 5264.c.....t...........528289
FJ445111.1 Human rhinovirus 1 strain ATCC VR-1559, complete genome 5278.c..............t..529689
FJ445111.1 Human rhinovirus 1 strain ATCC VR-1559, complete genome 989_.........ac....___100368
FJ445114.1 Human rhinovirus 9 isolate F01, complete genome 5268.c..............t..528689
FJ445114.1 Human rhinovirus 9 isolate F01, complete genome 3631_____..........____364052
FJ445115.1 Human rhinovirus 9 isolate F02, complete genome 5267.c..............t..528589
FJ445117.1 Human rhinovirus 13 isolate F03, complete genome 5277....c...........t..529589
FJ445117.1 Human rhinovirus 13 isolate F03, complete genome 3635...at........._____364863
FJ445123.1 Human rhinovirus 25 strain ATCC VR-1135, complete genome 5258.............a..t..527689
FJ445126.1 Human rhinovirus 31 strain ATCC VR-506, complete genome 5263.............a..t..528189
FJ445127.1 Human rhinovirus 32 strain ATCC VR-1142, complete genome 5265.t..............t..528389
FJ445128.1 Human rhinovirus 33 strain ATCC VR-330, complete genome 5265.t...........a.....528389
FJ445128.1 Human rhinovirus 33 strain ATCC VR-330, complete genome 3623...at........._____363663
FJ445140.1 Human rhinovirus 56 strain ATCC VR-1166, complete genome 5268.............a..t..528689
FJ445140.1 Human rhinovirus 56 strain ATCC VR-1166, complete genome 3104_____.........c..__311557
FJ445141.1 Human rhinovirus 57 isolate fs ship#1-hrv-57, complete genome 5266.t...........a.....528489
FJ445142.1 Human rhinovirus 58 strain ATCC VR-1168, complete genome 5279.t.........t.......529789
FJ445142.1 Human rhinovirus 58 strain ATCC VR-1168, complete genome 6959____.........._____695052
FJ445144.1 Human rhinovirus 61 strain ATCC VR-1171, complete genome 5279....c..c...........529789
FJ445149.1 Human rhinovirus 67 strain ATCC VR-1177, complete genome 5266....t...........t..528489
FJ445160.1 Human rhinovirus 82 strain ATCC VR-1192, complete genome 5260.............c..t..527889
FJ445167.1 Human rhinovirus 90 strain ATCC VR-1291, complete genome 5256.c..............t..527489
FJ445167.1 Human rhinovirus 90 strain ATCC VR-1291, complete genome 3614...at........._____362763
FJ445167.1 Human rhinovirus 90 strain ATCC VR-1291, complete genome 5201..a........._______519057
FJ445177.1 Human rhinovirus 9 strain ATCC VR-489, complete genome 5266.t..............t..528489
FJ445177.1 Human rhinovirus 9 strain ATCC VR-489, complete genome 3624...at..........____363868
FJ445179.1 Human rhinovirus 30 strain ATCC VR-1140, complete genome 5230..........c.....t..524889
FJ445180.1 Human rhinovirus 38 strain ATCC VR-1148, complete genome 5268.............a..t..528689
FJ445182.1 Human rhinovirus 76 strain ATCC VR-1186, complete genome 5264.............a..t..528289
FJ445182.1 Human rhinovirus 76 strain ATCC VR-1186, complete genome 3622...at........._____363563
FJ445184.1 Human rhinovirus 89 strain ATCC VR-1199, complete genome 5291.t.........t.......530989
FJ445189.1 Human rhinovirus 34 strain ATCC VR-1144, complete genome 5251.g...........a.....526989
FJ445190.1 Human rhinovirus 24 strain ATCC VR-1134, complete genome 5264.c.....t...........528289
NC_001617.1 Human rhinovirus 89, complete genome 5291.t.........t.......530989
DQ473507.1 Human rhinovirus 53, complete genome 5282..........c.....___529778
DQ473507.1 Human rhinovirus 53, complete genome 3794_________..........380352
DQ473508.1 Human rhinovirus 28, complete genome 5288.t..............___530378
DQ473508.1 Human rhinovirus 28, complete genome 984_.........cc.....a.100178
DQ473508.1 Human rhinovirus 28, complete genome 5941___...a..........__595468
DQ473508.1 Human rhinovirus 28, complete genome 3800_________..........380952
FJ445150.1 Human rhinovirus 68 strain ATCC VR-1178, complete genome 5304.t..............___531978
FJ445150.1 Human rhinovirus 68 strain ATCC VR-1178, complete genome 2179___..t.........____219057
EF582387.1 Human rhinovirus C strain 026, complete genome 5218....c.........c.g..523684
DQ473485.1 Human rhinovirus 3, complete genome 5344.............cc.a..536284
DQ473485.1 Human rhinovirus 3, complete genome 5995____..a.........___600657
EF173422.1 Human rhinovirus 3, complete genome 5344.............cc.a..536284
EF173422.1 Human rhinovirus 3, complete genome 5995____..a.........___600657
AY751783.1 Human rhinovirus 39, complete genome 5266.c..t...........t..528484
AY751783.1 Human rhinovirus 39, complete genome 977_.........gc.....a.99478
AY751783.1 Human rhinovirus 39, complete genome 3624...at........._____363763
DQ473505.1 Human rhinovirus 36, complete genome 5280.t.........t....t..529884
DQ473505.1 Human rhinovirus 36, complete genome 3119.........._________312852
DQ473510.1 Human rhinovirus 75, complete genome 5272.g..c...........t..529084
DQ473511.1 Human rhinovirus 55, complete genome 5168.t...........a..t..518684
DQ473511.1 Human rhinovirus 55, complete genome 5113..a........._______510257
EF173419.1 Human rhinovirus 94, complete genome 5264.g..t..t...........528284
FJ445132.1 Human rhinovirus 45 strain ATCC VR-1155, complete genome 5252.c..c...........t..527084
FJ445132.1 Human rhinovirus 45 strain ATCC VR-1155, complete genome 4547_.t...a.........___453368
FJ445133.1 Human rhinovirus 47 strain ATCC VR-1157, complete genome 5264.g...........a..t..528284
FJ445185.1 Human rhinovirus 94 strain ATCC VR-1295, complete genome 5264.g..t..t...........528284
EF582386.1 Human rhinovirus C strain 025, complete genome 5253.t...........a..___526873
DQ473487.1 Human rhinovirus 35, complete genome 5352.t..c.........c.a..537078
DQ473487.1 Human rhinovirus 35, complete genome 2565_____..........____255652
FJ445124.1 Human rhinovirus 26 strain ATCC VR-1136, complete genome 5344.t...........ac.a..536278
FJ445124.1 Human rhinovirus 26 strain ATCC VR-1136, complete genome 2558____...........____254857
FJ445161.1 Human rhinovirus 83 strain ATCC VR-1193, complete genome 5359.g..c.........c.a..537778
FJ445169.1 Human rhinovirus 92 strain ATCC VR-1293, complete genome 5360.t..t.........c.a..537878
FJ445169.1 Human rhinovirus 92 strain ATCC VR-1293, complete genome 2570_____..........____256152
DQ473494.1 Human rhinovirus 74, complete genome 5259..........ct.a..t..527778
DQ473494.1 Human rhinovirus 74, complete genome 5891_.a..........______590257
DQ473504.1 Human rhinovirus 88, complete genome 5282.c.........t.a..t..530078
FJ445136.1 Human rhinovirus 51 strain ATCC VR-1161, complete genome 6970___..........._____696057
FJ445136.1 Human rhinovirus 51 strain ATCC VR-1161, complete genome 3110.........._________311952
GU219984.1 Human rhinovirus C strain HRV-C15 isolate W10, complete genome 7007.........t..ta..t._699073
FJ445147.1 Human rhinovirus 65 strain ATCC VR-1175, complete genome 7020.........t.tg..g.._703773
FJ445147.1 Human rhinovirus 65 strain ATCC VR-1175, complete genome 3120.........._________312952
EF186077.1 Human rhinovirus QPM polyprotein gene, complete cds 2174.........c.c.._____216163
FJ445134.1 Human rhinovirus 49 isolate F04, complete genome 3604...at........._____361763
EU840952.2 Human rhinovirus C strain CL-170085, complete genome 6109___.........a..____612057
FJ445119.1 Human rhinovirus 19 strain ATCC VR-1129, complete genome 4764____.........c..___477557
EF173425.1 Human rhinovirus 93, complete genome 5346.........._________535552
FJ445130.1 Human rhinovirus 42 strain ATCC VR-338, complete genome 2557_____..........____254852
FJ445164.1 Human rhinovirus 86 strain ATCC VR-1196, complete genome 2562_____..........____255352
FJ445172.1 Human rhinovirus 97 strain ATCC VR-1297, complete genome 2553_____..........____254452
FJ445187.1 Human rhinovirus 35 strain ATCC VR-1145, complete genome 2565_____..........____255652
DQ473503.1 Human rhinovirus 7, complete genome 6965____.........._____695652
FJ445152.1 Human rhinovirus 71 strain ATCC VR-1181, complete genome 6978____.........._____696952
FJ445165.1 Human rhinovirus 89 isolate F09, complete genome 3119.........._________312852
FJ445166.1 Human rhinovirus 89 isolate F08, complete genome 3121.........._________313052
FJ445176.1 Human rhinovirus 7 strain ATCC VR-1117, complete genome 6965____.........._____695652