../../tmp/servers/virsirnadb/2053794622
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi11981tagtcacggctagctgtga19
D85516.1 Hepatitis C virus genomic RNA, complete cds 9457...................9475100
AF011751.1 Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds 9521...................9539100
AF011752.1 Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds 9521...................9539100
AF011753.1 Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds 9521...................9539100
D89815.1 Hepatitis C virus genomic RNA, complete sequence 9470...................9488100
AF054247.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete9517...................9535100
AF054248.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete9517...................9535100
AF054249.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete9518...................9536100
AJ132997.1 Hepatitis C virus, complete genome, isolate HCV-AD78P1 9455...................9473100
AJ238799.1 Hepatitis C virus type 1b complete genome, isolate Con1 9527...................9545100
AF176573.1 Hepatitis C virus subtype 1b strain 274933RU, complete genome 9522...................9540100
AB016785.1 Hepatitis C virus genomic RNA, complete sequence 9460...................9478100
AF169002.1 Hepatitis C virus subtype 2a isolate NDM228, complete genome 9582...................9600100
AF169003.1 Hepatitis C virus subtype 2a isolate G2aK1, complete genome 9615...................9633100
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 9575...................9593100
AF271632.1 Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome 9540...................9558100
AB030907.1 Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome 9576...................9594100
AJ278830.1 Hepatitis C virus genomic RNA for polyprotein gene 9532...................9550100
AB049088.1 Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 9538...................9556100
AB049089.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT109493...................9511100
AB049090.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149493...................9511100
AB049091.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149469...................9487100
AB049095.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT169507...................9525100
AB049101.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT229520...................9538100
AF333324.1 Hepatitis C virus type 1b polyprotein mRNA, complete cds 9509...................9527100
AB047639.1 Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome 9600...................9618100
AB047641.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 9581...................9599100
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 9600...................9618100
AB047643.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 9563...................9581100
AB047644.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 9613...................9631100
AB047645.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 9605...................9623100
AF356827.1 Hepatitis C virus subtype 1b isolate HCV-S1, complete genome 9531...................9549100
AY045702.1 Hepatitis C virus isolate HCR6, complete genome 9533...................9551100
AF139594.2 Hepatitis C virus subtype 1b strain HCV-N, complete genome 9538...................9556100
AB080299.1 Hepatitis C virus genomic RNA, complete genome, isolate:M1LE 9509...................9527100
AY460204.1 Hepatitis C virus from Shanghai, complete genome 9499...................9517100
AY746460.1 Hepatitis C virus genotype 2a polyprotein gene, complete cds 9611...................9629100
D84263.2 Hepatitis C virus (isolate VN235) genomic RNA, complete genome 9537...................9555100
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 9523...................9541100
D84265.2 Hepatitis C virus (isolate VN004) genomic RNA, complete genome 9544...................9562100
AB191333.1 Hepatitis C virus genomic RNA, complete genome, strain:0 9509...................9527100
DQ071885.1 Hepatitis C virus subtype 1b polyprotein mRNA, complete cds 9527...................9545100
AB249644.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9481...................9499100
EF621489.1 Hepatitis C virus subtype 1a strain HC-TN, complete genome 9521...................9539100
EU260395.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete9314...................9332100
EU260395.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete8385..c.g...a........._840278
EU363761.1 Recombinant Hepatitis C virus H77C/JFH1, complete genome 9588...................9606100
AB426117.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9481...................9499100
AB435162.2 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9543...................9561100
EU255967.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet9286...................9304100
EU857431.1 Hepatitis C virus subtype 1b isolate Whu, complete genome 9525...................9543100
AB442219.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9509...................9527100
AB442220.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9509...................9527100
AB442221.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9509...................9527100
AB442222.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9512...................9530100
FN435993.1 Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN9535...................9553100
AB520610.1 Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC9520...................9538100
GU133617.1 Hepatitis C virus subtype 1b, complete genome 9568...................9586100
FN666428.2 Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol9515...................9533100
D84262.2 Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC9550...................9568100
AF177036.1 Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen9633...................9651100
AF009606.1 Hepatitis C virus subtype 1a polyprotein gene, complete cds 9568...................9586100
AF169005.1 Hepatitis C virus subtype 2a isolate NDM59, complete genome 9622............c......964094
AB047640.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 9596.g.................961494
EU155294.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V329/2002, complet9275...............a...929394
EU155247.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1/2005, complete 9305....g..............932394
AM910652.2 Hepatitis C virus subtype 1g complete genome 9476...............____949078
AJ851228.1 Hepatitis C virus gene for polyprotein, genomic RNA, isolate Equatori9468.............._____948173
AF511948.1 Hepatitis C virus isolate XF222 polyprotein-like gene, complete seque8453..c.g...a........._847078
EF407426.1 Hepatitis C virus isolate 8070 polyprotein genomic sequence 8401..c.g...a........._841878
EF407434.1 Hepatitis C virus isolate 2011 polyprotein gene, complete cds 8374..c.g...a........._839178
EF407442.1 Hepatitis C virus isolate 8012 polyprotein gene, complete cds 8366..c.g...a........._838378
EF407449.1 Hepatitis C virus isolate 2027 polyprotein gene, complete cds 8412..c.g...a........._842978
EU362881.1 Hepatitis C virus isolate 2027_FU24 polyprotein (pol) gene, partial c8413..c.g...a........._843078
EU362898.1 Hepatitis C virus isolate 8012_FU24 polyprotein (pol) gene, complete 8356..c.g...a........._837378
EU362899.1 Hepatitis C virus isolate 1013q polyprotein (pol) gene, partial cds 8413..c.g...a........._843078
EU362901.1 Hepatitis C virus isolate 2011q polyprotein (pol) gene, complete cds 8374..c.g...a........._839178
EU362902.1 Hepatitis C virus isolate 2027q polyprotein (pol) gene, partial cds 8412..c.g...a........._842978
EU239715.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V423/2003, complet8378..c.g...a........._839578
EU260396.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V11/2004, complete8355..c.g...a........._837278
EU155242.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V73/2004, complete8369..c.g...a........._838678
EU155246.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V93/2003, complete8371..c.g...a........._838878
EU482838.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V361/2006, complet8387..c.g...a........._840478
EU482843.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V435/2005, complet8379..c.g...a........._839678
EU482847.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V5/2004, complete 8369..c.g...a........._838678
EU482867.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V461/2006, complet8385..c.g...a........._840278
EU482878.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V19/2004, complete8378..c.g...a........._839578
EU155249.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V337/2006, complet8369..c.g...a........._838678
EU155270.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V399/2006, complet8369..c.g...a........._838678
EU155276.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V432/2002, complet8371..c.g...a........._838878
EU155286.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V319/2001, complet8347..c.g...a........._836478
EU155297.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V333/2002, complet8368..c.g...a........._838578
EU155309.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V356/2003, complet8367..c.g...a........._838478
EU155313.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V413/2003, complet8360..c.g...a........._837778
EU155338.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V169/1996, complet8370..c.g...a........._838778
EU155339.2 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V172/1990, complet8347..c.g...a........._836478
EU155352.2 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V262/2004, complet8378..c.g...a........._839578
EU529676.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V39/2004, complete8384..c.g...a........._840178
EU595697.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V507/2001, complet8368..c.g...a........._838578
EU595698.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V44/2001, complete8369..c.g...a........._838678
EU255928.1 Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V231/2003, complet8378..c.g...a........._839578
EU255937.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V700/2006, complet8369..c.g...a........._838678
EU256067.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V402/2006, complet8379..c.g...a........._839678
EU256068.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V405/2006, complet8372..c.g...a........._838978
EU256087.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V114/2001, complet8347..c.g...a........._836478
EU256097.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V324/2001, complet8378..c.a...a........._839578
EU255998.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V113/2001, complet8379..c.g...a........._839678
EU256013.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V53/2004, complete8376..c.g...a........._839378
EU256023.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V67/2003, complete8378..c.g...a........._839578
EU256025.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V79/2002, complete8348..c.g...a........._836578
EU256032.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V92/2003, complete8376..c.g...a........._839378
EU256037.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V98/2004, complete8385..c.g...a........._840278
EU256041.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2/2005, complete 8383..c.g...a........._840078
EU256047.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V393/2006, complet8378..c.g...a........._839578
EU256052.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V403/2006, complet8377..c.g...a........._839478
EU255981.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V191/1990, complet8385..c.g...a........._840278
EU255992.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V213/1992, complet8373..c.g...a........._839078
FJ024087.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1705/2007, comple8379..c.g...a........._839678
FJ024274.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1707/2007, comple8305..c.g...a........._832278
FJ024280.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1717/2007, comple8361..c.g...a........._837878
EU862827.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V218/1993, partial8369..c.g...a........._838678
FJ182000.1 Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1712/2007, comple8346..c.g...a........._836378
EU781804.1 Hepatitis C virus subtype 1a isolate 02-46, complete genome 8376..c.g...a........._839378
FJ821465.1 Hepatitis C virus strain M21-2k/1b, complete genome 8435..c.g...a........._845278