../../tmp/servers/virsirnadb/1494421019
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12101tgactgcagagagtgctga19
AF011751.1 Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds 9557...................9575100
AF011752.1 Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds 9557...................9575100
AF011753.1 Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds 9557...................9575100
D89815.1 Hepatitis C virus genomic RNA, complete sequence 9506...................9524100
AF054247.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete9553...................9571100
AF054248.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete9553...................9571100
AF054249.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete9554...................9572100
AJ238799.1 Hepatitis C virus type 1b complete genome, isolate Con1 9563...................9581100
AF176573.1 Hepatitis C virus subtype 1b strain 274933RU, complete genome 9558...................9576100
AB016785.1 Hepatitis C virus genomic RNA, complete sequence 9496...................9514100
AF271632.1 Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome 9576...................9594100
AJ278830.1 Hepatitis C virus genomic RNA for polyprotein gene 9568...................9586100
AB049088.1 Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 9574...................9592100
AB049089.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT109529...................9547100
AB049090.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149529...................9547100
AB049091.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149505...................9523100
AB049095.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT169543...................9561100
AB049101.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT229556...................9574100
AF333324.1 Hepatitis C virus type 1b polyprotein mRNA, complete cds 9545...................9563100
AF356827.1 Hepatitis C virus subtype 1b isolate HCV-S1, complete genome 9567...................9585100
AY045702.1 Hepatitis C virus isolate HCR6, complete genome 9569...................9587100
AF139594.2 Hepatitis C virus subtype 1b strain HCV-N, complete genome 9574...................9592100
AB080299.1 Hepatitis C virus genomic RNA, complete genome, isolate:M1LE 9545...................9563100
AY460204.1 Hepatitis C virus from Shanghai, complete genome 9535...................9553100
D84263.2 Hepatitis C virus (isolate VN235) genomic RNA, complete genome 9573...................9591100
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 9559...................9577100
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 6886.a.........gc....._690378
D84265.2 Hepatitis C virus (isolate VN004) genomic RNA, complete genome 9580...................9598100
AB191333.1 Hepatitis C virus genomic RNA, complete genome, strain:0 9545...................9563100
DQ071885.1 Hepatitis C virus subtype 1b polyprotein mRNA, complete cds 9563...................9581100
AB249644.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9517...................9535100
EF621489.1 Hepatitis C virus subtype 1a strain HC-TN, complete genome 9557...................9575100
AB426117.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9517...................9535100
AB435162.2 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9579...................9597100
EU857431.1 Hepatitis C virus subtype 1b isolate Whu, complete genome 9561...................9579100
AB442219.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9545...................9563100
AB442220.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9545...................9563100
AB442221.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9545...................9563100
AB442222.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9548...................9566100
FN435993.1 Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN9571...................9589100
AB520610.1 Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC9556...................9574100
GU133617.1 Hepatitis C virus subtype 1b, complete genome 9604...................9622100
D84262.2 Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC9586...................9604100
AF009606.1 Hepatitis C virus subtype 1a polyprotein gene, complete cds 9604...................9622100
D85516.1 Hepatitis C virus genomic RNA, complete cds 9493....c..............951194
AJ132997.1 Hepatitis C virus, complete genome, isolate HCV-AD78P1 9491....c..............950994
AF169002.1 Hepatitis C virus subtype 2a isolate NDM228, complete genome 9618................c._963589
AF169003.1 Hepatitis C virus subtype 2a isolate G2aK1, complete genome 9651................c._966889
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 9611................c._962889
AF169005.1 Hepatitis C virus subtype 2a isolate NDM59, complete genome 9658................c._967589
AB030907.1 Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome 9612................c._962989
AB047639.1 Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome 9636................c._965389
AB047640.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 9632................c._964989
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 9636................c._965389
AB047643.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 9599................c._961689
AB047644.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 9649................c._966689
AB047645.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 9641................c._965889
EU363761.1 Recombinant Hepatitis C virus H77C/JFH1, complete genome 9624................c._964189
AF177036.1 Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen9669................c._968689
AB047641.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 9617............t...c._963484
AY746460.1 Hepatitis C virus genotype 2a polyprotein gene, complete cds 9647............t...c._966484
FJ462440.1 Hepatitis C virus isolate QC93, complete genome 6880............c...a._689784
AY878650.1 Hepatitis C virus subtype 6k isolate KM45, complete genome 6869.c..........c...c._688678
AY878651.1 Hepatitis C virus subtype 6k isolate KM41, complete genome 8546.c.t...t.........._856378
DQ278891.1 Hepatitis C virus subtype 6k isolate KM45, complete genome 6885.c..........c...c._690278
DQ278893.1 Hepatitis C virus subtype 6k isolate KM41, complete genome 8578.c.t...t.........._859578
EU246933.1 Hepatitis C virus strain D33 polyprotein gene, complete cds 6861.a.........gc....._687878