../../tmp/servers/virsirnadb/1206192229
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi21861ttgagtatcctgctcgagc19
EF570133.1 Hepatitis E virus isolate SH-SW-zs1, complete genome 7030....c..............704894
EF570133.1 Hepatitis E virus isolate SH-SW-zs1, complete genome 712____.........a.t.._69963
AB091395.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSN-S7012....t...........c..703089
AB091395.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSN-S6520_______.........t..650957
AB099347.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JK4 7028....t...........c..704689
AB099347.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JK4 6536_______.........t..652557
AB200239.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSN-Sap-FH027029....t...........c..704789
AB200239.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSN-Sap-FH026537_______.........t..652657
AB193176.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSF-Tot03C 7029....t...........c..704789
AB193176.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSF-Tot03C 6537_______.........t..652657
AB193177.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Sap01C 7029....t...........c..704789
AB193177.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Sap01C 6537_______.........t..652657
AB193178.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Nii02L 7003....t...........c..702189
AB193178.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Nii02L 6511_______.........t..650057
AB220976.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 7028....c...........t..704689
AB220977.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 7028....c...........t..704689
AB220979.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 7028....c...........t..704689
AB291959.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JTC-K6988....c...........t..700689
AB291965.1 Hepatitis E virus genomic RNA, complete genome, isolate: HRC-HE14C 7028....c...........t..704689
AB291966.1 Hepatitis E virus genomic RNA, complete genome, isolate: JST-KitAsa047028....c...........t..704689
AB291967.1 Hepatitis E virus genomic RNA, complete genome, isolate: JKO-Aba-FH067028....c...........t..704689
AB291968.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMM-Aba06C 7028....c...........t..704689
EU723512.2 Swine hepatitis E virus isolate SW626, complete genome 7015....t...........t..703389
FJ610232.1 Swine hepatitis E virus isolate swCH189, complete genome 7029....c...........t..704789
GU361892.1 Swine hepatitis E virus strain hb-3, complete genome 7028....c...........c..704689
GU361892.1 Swine hepatitis E virus strain hb-3, complete genome 3874______.c...........386263
GU119960.2 Swine hepatitis E virus isolate CHN-XJ-SW33, complete genome 7025....t...........t..704389
GU119960.2 Swine hepatitis E virus isolate CHN-XJ-SW33, complete genome 265.c..ca..at.........24773
HM439284.1 Hepatitis E virus isolate EChZ20, complete genome 7019....t...........t..703789
FJ763142.1 Hepatitis E virus isolate KNIH-hHEV4, complete genome 7025.c..c...........t..704384
HQ634346.1 Hepatitis E virus strain TW6196E, complete genome 7026.c..c...........t..704484
HQ634346.1 Hepatitis E virus strain TW6196E, complete genome 266.c..ca..at.........24873
AB248520.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA04-191186__...c.g.........__7268
AB290313.1 Hepatitis E virus genomic RNA, complete genome, clone: swMN06-C1056 86__...c.g.........__7268
AB291958.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JNH-E46__...c.g.........__3268
AB222182.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJSG1 6521______..........t..650963
AB246676.1 Hepatitis E virus genomic RNA, complete genome, isolate:HEVN1 6521______..........t..650963
AB246676.1 Hepatitis E virus genomic RNA, complete genome, isolate:HEVN1 3860________...........385057
AB248522.1 Hepatitis E virus genomic RNA, complete genome, isolate: swJ12-4 259______..a..........24763
AB290312.1 Hepatitis E virus genomic RNA, complete genome, clone: swMN06-A1288 3862______.c...........385063
AB369691.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E3842______.c...........383063
AB369691.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E6501______..........t..648963
AB369691.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E1641_________..........163252
EU676172.2 Swine hepatitis E virus isolate swGX40, complete genome 259______..a..........24763
AB481229.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJR-P6521______..........t..650963
AB481229.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJR-P3860________...........385057
AB481229.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJR-P1661_________..........165252
AP003430.1 Hepatitis E virus genomic RNA, complete genome, isolate: JRA1 3861________...........385157
AP003430.1 Hepatitis E virus genomic RNA, complete genome, isolate: JRA1 1649_______.g..........166057
AP003430.1 Hepatitis E virus genomic RNA, complete genome, isolate: JRA1 6521_______.........t..651057
AB091394.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JJT-K3842________...........383257
AB091394.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JJT-K1624_...tat.g..........164173
AB091394.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JJT-K6503______..........t._649257
AB108537.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:CCC2203853________...........384357
AB189070.1 Hepatitis E virus genomic RNA, complete genome, isolate: JBOAR1-Hyo043861________...........385157
AB189070.1 Hepatitis E virus genomic RNA, complete genome, isolate: JBOAR1-Hyo041649_______.g..........166057
AB189070.1 Hepatitis E virus genomic RNA, complete genome, isolate: JBOAR1-Hyo046522______..........t._651157
AB189071.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JDEER3844________...........383457
AB189071.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JDEER1632_______.g..........164357
AB189071.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JDEER6505______..........t._649457
AB189072.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy3835________...........382557
AB189072.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy1623_______.g..........163457
AB189072.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6496______..........t._648557
AB189073.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy3835________...........382557
AB189073.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy1623_______.g..........163457
AB189073.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6496______..........t._648557
AB189074.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy3835________...........382557
AB189074.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy1623_______.g..........163457
AB189074.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6496______..........t._648557
AB189075.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy3835________...........382557
AB189075.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy1623_______.g..........163457
AB189075.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6496______..........t._648557
AB222183.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJTS1 3860________...........385057
AB301710.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 3860________...........385057
AB301710.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6520_______.........t..650957
AB362843.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p3860________...........385057
AB362843.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p6520_______.........t..650957
AB362842.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p3860________...........385057
AB362842.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p6520_______.........t..650957
AB362841.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p3860________...........385057
AB362841.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p6520_______.........t..650957
AB362840.1 Hepatitis E virus genomic RNA, complete genome, isolate: 114d/A549 3860________...........385057
AB362840.1 Hepatitis E virus genomic RNA, complete genome, isolate: 114d/A549 6520_______.........t..650957
AB362839.1 Hepatitis E virus genomic RNA, complete genome, isolate: 118d/Alex 3860________...........385057
AB362839.1 Hepatitis E virus genomic RNA, complete genome, isolate: 118d/Alex 6520_______.........t..650957
AB425831.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 3860________...........385057
AB425831.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6520_______.........t..650957
AB425830.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 3860________...........385057
AB425830.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6520_______.........t..650957
AB443625.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s3835________...........382557
AB443625.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6495_______.........t..648457
AB443627.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s3835________...........382557
AB443627.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6495_______.........t..648457
AB291952.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIY-T3840________...........383057
AB291952.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIY-T6500_______.........t..648957
AB291953.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSO-O3840________...........383057
AB291953.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSO-O6500_______.........t..648957
AB291954.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSS-O3840________...........383057
AB291954.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSS-O6500_______.........t..648957
AB291955.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSW-K3840________...........383057
AB291955.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSW-K6500_______.........t..648957
AB291956.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JYM-T3840________...........383057
AB291956.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JYM-T6500_______.........t..648957
AB291962.1 Hepatitis E virus genomic RNA, complete genome, isolate: JHK-Toy04C 3860________...........385057
AB437316.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 3860________...........385057
AB437316.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6520_______.........t..650957
AB437319.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 3502________...........349257
AB437319.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6162_______.........t..615157
FJ527832.2 Hepatitis E virus isolate SAAS-JDY5, complete genome 3858________...........384857
FJ527832.2 Hepatitis E virus isolate SAAS-JDY5, complete genome 1643_...cat.g..........166073
FJ527832.2 Hepatitis E virus isolate SAAS-JDY5, complete genome 1662_________..........165352
AB437317.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 3860________...........385057
AB437317.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6521_______.........t..651057
AB437318.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 3860________...........385057
AB437318.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6520_______.........t..650957
FJ906895.1 Hepatitis E virus isolate GDC9, complete genome 3918________...........390857
FJ906896.1 Hepatitis E virus isolate GDC46, complete genome 3915________...........390557
FJ956757.1 Hepatitis E virus isolate HEV_RKI, complete genome 3875________...........386557
DQ279091.2 Swine hepatitis E virus isolate swDQ, complete genome 259_______.a..........24857
AB369688.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E6514______..........t._650357
AB443623.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6495_______.........t..648457
AB443624.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6495_______.........t..648457
AB443626.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6495_______.........t..648457
AB291951.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-S6500_______.........t..648957
AB291957.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JYU-O6500_______.........t..648957
AB291960.1 Hepatitis E virus genomic RNA, complete genome, isolate: JTK-Kag06C 6521_______.........t..651057
AB291963.1 Hepatitis E virus genomic RNA, complete genome, isolate: JRM-Toy05C 1648_______.g..........165957
AB291963.1 Hepatitis E virus genomic RNA, complete genome, isolate: JRM-Toy05C 6520_______.........t..650957
AB602441.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJOY_06 6542_______.........t..653157
AF455784.1 Hepatitis E virus strain Osh 205, complete genome 6507_____..........____649852
AB197673.1 Hepatitis E virus genomic RNA, complete genome, isolate: JKO-ChiSai98266.c..ca..at.........24873
AB236320.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMNG-Oki02C 1661_________..........165252
EU366959.1 Hepatitis E virus isolate swGX32, complete genome 269.c..ca..at.........25173
EU360977.1 Hepatitis E virus isolate swX07-E1, complete genome 3867________.........._385852
AB291961.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMH-Osa04C 3864________.........._385552