../../tmp/servers/virsirnadb/1991937370
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi21631ttggcttaaccctactgta19
U57056.1CXU57056 Coxsackievirus B3 Woodruff variant, complete genome 7328...................7346100
X79047.1 Echovirus type 12, prototype Travis wild type genome 7351...................7369100
X77708.1 Echovirus type 12, prototype Travis complete RNA genome 7351...................7369100
AF083069.1 Echovirus 5, complete genome 7361...................7379100
AF241359.1 Enterovirus CA55-1988, complete genome 7339...................7357100
AF241359.1 Enterovirus CA55-1988, complete genome 7391_____...c..........737868
AY186745.1 Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds 7299...................7317100
AY186746.1 Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds 7299...................7317100
AY186747.1 Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds7299...................7317100
AY186748.1 Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds7299...................7317100
AF465518.1 Human echovirus 2 strain Cornelis, complete genome 7363...................7381100
AY302543.1 Human echovirus 17 strain CHHE-29 complete genome 7344...................7362100
AY302543.1 Human echovirus 17 strain CHHE-29 complete genome 7396_____...c..........738368
AY302544.1 Human echovirus 19 strain Burke complete genome 7361...................7379100
AY302545.1 Human echovirus 2 strain Cornelis complete genome 7363...................7381100
AY302546.1 Human echovirus 20 strain JV-1 complete genome 7322...................7340100
AY302548.1 Human echovirus 24 strain DeCamp complete genome 7361...................7379100
AY302553.1 Human echovirus 3 strain Morrisey complete genome 7356...................7374100
AY302554.1 Human echovirus 31 strain Caldwell complete genome 7360...................7378100
AY302555.1 Human echovirus 32 strain PR-10 complete genome 7348...................7366100
AY302556.1 Human echovirus 33 strain Toluca-3 complete genome 7322...................7340100
AY302560.1 Enterovirus 69 strain Toluca-1 complete genome 7339...................7357100
DQ534205.1 Human echovirus 30 isolate 14916net87, complete genome 7358...................7376100
M33854.1CXA3CG Coxsackievirus B3 (CVB3) complete genome 7327.................._734494
M33854.1CXA3CG Coxsackievirus B3 (CVB3) complete genome 7379_____...c..........736668
M88483.1CXAB3CG Coxsackievirus B3 mRNA, complete genome 7328.................._734594
M88483.1CXAB3CG Coxsackievirus B3 mRNA, complete genome 7380_____...c..........736768
AF231763.1 Coxsackievirus B3 strain 31-1-93, complete genome 7328.................._734594
AF231763.1 Coxsackievirus B3 strain 31-1-93, complete genome 7380_____...c..........736768
AF231764.1 Coxsackievirus B3 strain P, complete genome 7328.................._734594
AF231764.1 Coxsackievirus B3 strain P, complete genome 7380_____...c..........736768
AF231765.1 Coxsackievirus B3 strain PD, complete genome 7328.................._734594
AF231765.1 Coxsackievirus B3 strain PD, complete genome 7380_____...c..........736768
AY752946.1 Human coxsackievirus B3 strain 20, complete genome 7328.................._734594
AY752946.1 Human coxsackievirus B3 strain 20, complete genome 7380_____...c..........736768
X05690.1 Coxsackievirus B4 complete genome 7323.................c.734194
D00627.1CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G7377......c............739594
X80059.1 Echo Virus 11 genomic DNA 7367.................c.738594
S76772.1 polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive7324.................c.734294
AF085363.1 Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds 7334.................c.735294
AF081485.1 Coxsackievirus B2 strain Ohio, complete genome 7332.................c.735094
AF230973.1AF230973 Enterovirus Yanbian 96-83csf, complete genome 7334.................c.735294
AY036579.1 Human echovirus 7 strain Wallace polyprotein gene, complete cds 7355.................c.737394
AF317694.1 Human echovirus 18 strain Metcalf polyprotein gene, complete cds 7338.................c.735694
AF328683.1 Human coxsackievirus B4 polyprotein-like gene, complete sequence 7320.................c.733894
AF465516.1 Human echovirus 7 strain Wallace, complete genome 7355.................c.737394
AY302539.1 Human echovirus 13 strain Del Carmen complete genome 7338.................c.735694
AY302542.1 Human echovirus 16 strain Harrington complete genome 7361.................c.737994
AY302547.1 Human echovirus 21 strain Farina complete genome 7354.................c.737294
AY302550.1 Human echovirus 26 strain Coronel complete genome 7352.................c.737094
AY302551.1 Human echovirus 27 strain Bacon complete genome 7340.................c.735894
AY302552.1 Human echovirus 29 strain JV-10 complete genome 7355.......g...........737394
AY302557.1 Human echovirus 4 strain Pesacek complete genome 7322.................c.734094
AY302559.1 Human echovirus 7 strain Wallace complete genome 7355.................c.737394
AY673831.1 Human coxsackievirus B3 strain GA, complete genome 7329.................c.734794
AY843299.1 Human enterovirus 81 strain USA/CA68-10389, complete genome 7343.................c.736194
AY843301.1 Human enterovirus 83 strain USA/CA76-10392, complete genome 7322.................c.734094
AY843302.1 Human enterovirus 77 strain USA/TX97-10394, complete genome 7350.................c.736894
AJ849942.1 Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/7355...............c...737394
DQ480420.1 Human coxsackievirus B4 strain Tuscany, complete genome 7323.................c.734194
EF371880.2 Human enterovirus B isolate SE-03-78616, complete genome 7331...............c...734994
HM777023.1 Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome 7341.................c.735994
AF039205.1 Coxsackievirus B6 strain Schmitt, complete genome 7326.................__734289
AF105342.1 Coxsackievirus B6 strain Schmitt, complete genome 7326.................__734289
AF114384.1 Coxsackievirus B6 strain Schmitt, complete genome 7325.................__734189
AY302549.1 Human echovirus 25 strain JV-4 complete genome 7354.................__737089
AY843298.1 Human enterovirus 80 strain USA/CA67-10387, complete genome 7356.................__737289
AY843300.1 Human enterovirus 82 strain USA/CA64-10390, complete genome 7361.................__737789
AY752945.1 Human coxsackievirus B3 strain 0, complete genome 7328......c..........._734589
AY752945.1 Human coxsackievirus B3 strain 0, complete genome 7380_____...c..........736768
AY752944.2 Human coxsackievirus B3 strain 28, complete genome 7328......c..........._734589
AY752944.2 Human coxsackievirus B3 strain 28, complete genome 7380_____...c..........736768
AY036578.1 Human echovirus 7 strain UMMC polyprotein gene, complete cds 7354................___736984
DQ246620.1 Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome 7356................___737184
EF174469.1 Human coxsackievirus B2 isolate KOR 04-279, complete genome 7334................___734984
X67706.1 Coxsackievirus B5 complete genome 7329...............c.c.734789
X84981.1 Echovirus 9 (strain Hill), complete genome 7349...........t.....c.736789
X92886.1 Echovirus 9 (strain Barty), complete genome 7380...............c.c.739889
AF114383.1 Coxsackievirus B5 strain Faulkner, complete genome 7328...............c.c.734689
AF029859.2 Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen7325...............c.c.734389
AF524866.1 Human echovirus 9 strain Barty, complete genome 7382...............c.c.740089
AF524867.1 Human echovirus 9 isolate DM, complete genome 7382...............c.c.740089
AY302540.1 Human echovirus 14 strain Tow complete genome 7378.......g.........c.739689
AY302541.1 Human echovirus 15 strain CH 96-51 complete genome 7365......c..........c.738389
AJ577589.1 Human echovirus 11, isolate HUN-1108, complete virion genome 7360...............c.c.737889
AJ577590.1 Human echovirus 11, isolate FIN-0666, complete virion genome 7361...............c.c.737989
AY875692.1 Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome 7331...............c.c.734989
AY843308.1 Human enterovirus 101 strain CIV03-10361, complete genome 7373...............c.c.739189
DQ902712.1 Human enterovirus 84 isolate CIV2003-10603, complete genome 7351...............c.c.736989
DQ902712.1 Human enterovirus 84 isolate CIV2003-10603, complete genome 5599_____............a.561268
EU147493.1 Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds7321...............c.c.733989
FJ000001.1 Human coxsackievirus B3 strain Fuyang19, complete genome 7327...............c.c.734589
FJ357838.1 Human coxsackievirus B3 strain GZ803, complete genome 7330...............c.c.734889
GQ141875.1 Human coxsackievirus B3 strain Beijing0811, complete genome 7330...............c.c.734889
GU109481.1 Human coxsackievirus B3 strain SSM-CVB3, complete genome 7325...............c.c.734389
AB501329.1 Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-27339...............ca..735789
AB501331.1 Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)-7339...............ca..735789
AB501332.1 Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)-7339...............ca..735789
HM775882.1 Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome 7358..............t..__737484
AF162711.1 Echovirus 30 strain Bastianni, complete genome 7368...............____738278
AF311938.1 Human echovirus 30 strain Bastianni, complete genome 7373...............____738778
AF311939.1 Human coxsackievirus B4 strain E2 variant, complete genome 7325...............____733978
AJ276224.1 Human echovirus 11 genomic RNA for polyprotein 7359...............____737378
AY556057.1 Enterovirus 74 strain USA/CA75-10213, complete genome 7338...............____735278
AY556070.1 Enterovirus 75 strain USA/OK85-10362, complete genome 7358...............____737278
AY896763.1 Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen7300...............____731478
AY896765.1 Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g7327...............____734178
AY843303.1 Human enterovirus 85 strain BAN00-10353, complete genome 7350...............____736478
AY843304.1 Human enterovirus 86 strain BAN00-10354, complete genome 7328...............____734278
AY843305.1 Human enterovirus 87 strain BAN01-10396, complete genome 7350...............____736478
AY843306.1 Human enterovirus 88 strain BAN01-10398, complete genome 7361...............____737578
AY843307.1 Human enterovirus 97 strain BAN99-10355, complete genome 7341...............____735578
EF174468.1 Human coxsackievirus B2 isolate KOR 04-243, complete genome 7334...............____734878
EF174468.1 Human coxsackievirus B2 isolate KOR 04-243, complete genome 5577...ag...........___559273
EU144042.1 Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c7329...............____734378
AB426610.1 Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 7355...............____736978
AB426611.1 Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 7341...............____735578
HM031191.1 Human echovirus 25 strain HN-2, complete genome 7356...............____737078
HM185055.1 Human echovirus 6 strain Echo6/Henan/116/2008, complete genome 7347...............____736178
HM185056.1 Human enterovirus B strain EVB/Henan/127/2008, complete genome 7324...............____733878
M16572.1CXA3G Coxsackievirus B3, complete genome 7325.....ac..........._734284
M16572.1CXA3G Coxsackievirus B3, complete genome 7377_____...c..........736468
FJ172447.1 Human echovirus 4 strain AUS250G, complete genome 7323......c.........___733878
U16283.1E6U16283 Echovirus 6 lytic strain, complete genome 7345..a...c..........c.736384
AF465517.1 Human echovirus 6 strain Charles, complete genome 7346..a...c..........c.736484
AY302558.1 Human echovirus 6 strain D'Amori complete genome 7346..a...c..........c.736484
AY843297.1 Human enterovirus 79 strain USA/CA79-10384, complete genome 7358......cg.........__737478