VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
16120770
are
3
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1726
agguauuugaauuugcau
Human Papillomavirus [HPV]
E6
CaSki
Protein
90
16120770
Blast
SL
refseqs
     
siRNA sequence "
agguauuugaauuugcau
" alignment with "
Human Papillomavirus [HPV]
" virus reference Genome sequences
siRNA sequence matching with "
agguauuugaauuugcau
"
Human Papillomavirus [HPV]
" Virus reference Genome sequences
Browse all the records for "
Human Papillomavirus [HPV]
" virus
Browse "
virsi1726
" record
Length:
18
GC Content:
28 %
Starting position:
232
Strain of Virus:
HPV18
GenBank Acc:
NC_001357
Transfection Reagent:
Oligofectamine
Incubation Time (Hours):
24
Offtargets for "
agguauuugaauuugcau
" siRNA in Human Genome sequences
See
NC_001357
at Genbank
Pubmed:
16120770
Article:
RNA interference against human papillomavirus oncogenes in cervical cancer cells results in increased sensitivity to cisplatin.
Authors:
Putral LN, Bywater MJ, Gu W, Saunders NA, Gabrielli BG, Leggatt GR, McMillan NA.
Journal:
Mol Pharmacol. 2005 Nov;68(5):1311-9. Epub 2005 Aug 24.
Entrez:
16120770
virsi1724
gcaacaguuacugcgacgu
Human Papillomavirus [HPV]
E6
CaSki
Protein
81
16120770
Blast
SL
refseqs
     
siRNA sequence "
gcaacaguuacugcgacgu
" alignment with "
Human Papillomavirus [HPV]
" virus reference Genome sequences
siRNA sequence matching with "
gcaacaguuacugcgacgu
"
Human Papillomavirus [HPV]
" Virus reference Genome sequences
Browse all the records for "
Human Papillomavirus [HPV]
" virus
Browse "
virsi1724
" record
Length:
19
GC Content:
53 %
Starting position:
205
Strain of Virus:
HPV16
GenBank Acc:
NC_001526
Transfection Reagent:
Oligofectamine
Incubation Time (Hours):
24
Offtargets for "
gcaacaguuacugcgacgu
" siRNA in Human Genome sequences
See
NC_001526
at Genbank
Pubmed:
16120770
Article:
RNA interference against human papillomavirus oncogenes in cervical cancer cells results in increased sensitivity to cisplatin.
Authors:
Putral LN, Bywater MJ, Gu W, Saunders NA, Gabrielli BG, Leggatt GR, McMillan NA.
Journal:
Mol Pharmacol. 2005 Nov;68(5):1311-9. Epub 2005 Aug 24.
Entrez:
16120770
virsi1725
cacguagagaaacccagcu
Human Papillomavirus [HPV]
E6
CaSki
Protein
79
16120770
Blast
SL
refseqs
     
siRNA sequence "
cacguagagaaacccagcu
" alignment with "
Human Papillomavirus [HPV]
" virus reference Genome sequences
siRNA sequence matching with "
cacguagagaaacccagcu
"
Human Papillomavirus [HPV]
" Virus reference Genome sequences
Browse all the records for "
Human Papillomavirus [HPV]
" virus
Browse "
virsi1725
" record
Length:
19
GC Content:
53 %
Starting position:
537
Strain of Virus:
HPV16
GenBank Acc:
NC_001526
Transfection Reagent:
Oligofectamine
Incubation Time (Hours):
24
Offtargets for "
cacguagagaaacccagcu
" siRNA in Human Genome sequences
See
NC_001526
at Genbank
Pubmed:
16120770
Article:
RNA interference against human papillomavirus oncogenes in cervical cancer cells results in increased sensitivity to cisplatin.
Authors:
Putral LN, Bywater MJ, Gu W, Saunders NA, Gabrielli BG, Leggatt GR, McMillan NA.
Journal:
Mol Pharmacol. 2005 Nov;68(5):1311-9. Epub 2005 Aug 24.
Entrez:
16120770
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm