VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
16960393
are
10
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1399
cugguucggcuguacaugg
Hepatitis C Virus [HCV]
E2
HEK 293T
Protein
High
16960393
Blast
SL
refseqs
     
siRNA sequence "
cugguucggcuguacaugg
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
cugguucggcuguacaugg
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1399
" record
Length:
21
GC Content:
52 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
cugguucggcuguacaugg
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
virsi1402
uccagcuugugaauaccaa
Hepatitis C Virus [HCV]
E2
HEK 293T
Protein
High
16960393
Blast
SL
refseqs
     
siRNA sequence "
uccagcuugugaauaccaa
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
uccagcuugugaauaccaa
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1402
" record
Length:
21
GC Content:
38 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
uccagcuugugaauaccaa
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
virsi1405
accaaacguaacaccaacc
Hepatitis C Virus [HCV]
C
HEK 293T
Protein
80
16960393
Blast
SL
refseqs
     
siRNA sequence "
accaaacguaacaccaacc
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
accaaacguaacaccaacc
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1405
" record
Length:
21
GC Content:
43 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
accaaacguaacaccaacc
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
virsi1406
ggcgacaaccuaucccaaa
Hepatitis C Virus [HCV]
C
HEK 293T
Protein
60
16960393
Blast
SL
refseqs
     
siRNA sequence "
ggcgacaaccuaucccaaa
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
ggcgacaaccuaucccaaa
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1406
" record
Length:
21
GC Content:
48 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
ggcgacaaccuaucccaaa
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
virsi1396
gguuaggauguaugugggg
Hepatitis C Virus [HCV]
E2
HEK 293T
Protein
0
16960393
Blast
SL
refseqs
     
siRNA sequence "
gguuaggauguaugugggg
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
gguuaggauguaugugggg
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1396
" record
Length:
21
GC Content:
48 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
gguuaggauguaugugggg
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
virsi1398
ugagacagacgugaugcuc
Hepatitis C Virus [HCV]
E2
HEK 293T
Protein
0
16960393
Blast
SL
refseqs
     
siRNA sequence "
ugagacagacgugaugcuc
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
ugagacagacgugaugcuc
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1398
" record
Length:
21
GC Content:
48 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
ugagacagacgugaugcuc
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
virsi1400
auugcaaugacucccucca
Hepatitis C Virus [HCV]
E2
HEK 293T
Protein
0
16960393
Blast
SL
refseqs
     
siRNA sequence "
auugcaaugacucccucca
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
auugcaaugacucccucca
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1400
" record
Length:
21
GC Content:
43 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
auugcaaugacucccucca
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
virsi1401
cuaugcaacagggaacuug
Hepatitis C Virus [HCV]
C
HEK 293T
Protein
0
16960393
Blast
SL
refseqs
     
siRNA sequence "
cuaugcaacagggaacuug
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
cuaugcaacagggaacuug
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1401
" record
Length:
21
GC Content:
43 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
cuaugcaacagggaacuug
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
virsi1403
gcuuggguaaggucaucga
Hepatitis C Virus [HCV]
C
HEK 293T
Protein
0
16960393
Blast
SL
refseqs
     
siRNA sequence "
gcuuggguaaggucaucga
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
gcuuggguaaggucaucga
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1403
" record
Length:
21
GC Content:
48 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
gcuuggguaaggucaucga
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
virsi1404
ggucaucgauacccuuaca
Hepatitis C Virus [HCV]
C
HEK 293T
Protein
0
16960393
Blast
SL
refseqs
     
siRNA sequence "
ggucaucgauacccuuaca
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
ggucaucgauacccuuaca
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1404
" record
Length:
21
GC Content:
43 %
GenBank Acc:
AY587299
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
48
Offtargets for "
ggucaucgauacccuuaca
" siRNA in Human Genome sequences
See
AY587299
at Genbank
Pubmed:
16960393
Article:
RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:
Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:
Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:
16960393
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm