VIRsiRNAdb

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• VsiRNAid

Total number of Results for Influenza A Virus are 96
Results from 75 - 100

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siRNA sequence "ugcuucuugguucaacucc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ugcuucuugguucaacucc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1521 " record
Length: 19
GC Content:47 %
Starting position: 2131
Strain of Virus: A/PR/8/34
GenBank Acc: EF467820
Transfection Reagent: Oligofectamine

Offtargets for "ugcuucuugguucaacucc" siRNA in Human Genome sequences
See EF467820 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "uaaggcgaaucuggcgcca" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "uaaggcgaaucuggcgcca" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1523 " record
Length: 19
GC Content:58 %
Starting position: 390
Strain of Virus: A/PR/8/34
GenBank Acc: EF467822
Transfection Reagent: Oligofectamine

Offtargets for "uaaggcgaaucuggcgcca" siRNA in Human Genome sequences
See EF467822 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "ccgaggucgaaacguacgu" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ccgaggucgaaacguacgu" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1525 " record
Length: 19
GC Content:58 %
Starting position: 37
Strain of Virus: A/PR/8/34
GenBank Acc: EF467824
Transfection Reagent: Oligofectamine

Offtargets for "ccgaggucgaaacguacgu" siRNA in Human Genome sequences
See EF467824 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "cagauugcugacucccagc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "cagauugcugacucccagc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1526 " record
Length: 19
GC Content:58 %
Starting position: 480
Strain of Virus: A/PR/8/34
GenBank Acc: EF467824
Transfection Reagent: Oligofectamine

Offtargets for "cagauugcugacucccagc" siRNA in Human Genome sequences
See EF467824 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "uggcuggaucgagugagca" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "uggcuggaucgagugagca" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1527 " record
Length: 19
GC Content:58 %
Starting position: 598
Strain of Virus: A/PR/8/34
GenBank Acc: EF467824
Transfection Reagent: Oligofectamine

Offtargets for "uggcuggaucgagugagca" siRNA in Human Genome sequences
See EF467824 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "cggcuucgccgagaucaga" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "cggcuucgccgagaucaga" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1529 " record
Length: 19
GC Content:63 %
Starting position: 128
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "cggcuucgccgagaucaga" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "cgggacucuagcauacuua" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "cgggacucuagcauacuua" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1532 " record
Length: 19
GC Content:47 %
Starting position: 2240
Strain of Virus: A/PR/8/34
GenBank Acc: EF467818
Transfection Reagent: Oligofectamine

Offtargets for "cgggacucuagcauacuua" siRNA in Human Genome sequences
See EF467818 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "uaaggcgaaucuggcgcca" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "uaaggcgaaucuggcgcca" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1536 " record
Length: 19
GC Content:58 %
Starting position: 390
Strain of Virus: A/PR/8/34
GenBank Acc: EF467822
Transfection Reagent: Oligofectamine

Offtargets for "uaaggcgaaucuggcgcca" siRNA in Human Genome sequences
See EF467822 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "cggcuucgccgagaucaga" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "cggcuucgccgagaucaga" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1542 " record
Length: 19
GC Content:63 %
Starting position: 128
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "cggcuucgccgagaucaga" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "ggaagaacacagaucuuga" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ggaagaacacagaucuuga" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1656 " record
Length: 19
GC Content:42 %
Starting position: 126
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "ggaagaacacagaucuuga" siRNA in Human Genome sequences
See at Genbank
Pubmed:19479060
Article:Small interfering RNA targeting m2 gene induces effective and long term inhibition of influenza A virus replication.
Authors:Sui HY, Zhao GY, Huang JD, Jin DY, Yuen KY, Zheng BJ.
Journal:PLoS One. 2009 May 22;4(5):e5671.
Entrez:19479060

siRNA sequence "ggaucuuauuucuucggag" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ggaucuuauuucuucggag" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1659 " record
Length: 19
GC Content:42 %
Starting position: 1496
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "ggaucuuauuucuucggag" siRNA in Human Genome sequences
See at Genbank
Pubmed:19479060
Article:Small interfering RNA targeting m2 gene induces effective and long term inhibition of influenza A virus replication.
Authors:Sui HY, Zhao GY, Huang JD, Jin DY, Yuen KY, Zheng BJ.
Journal:PLoS One. 2009 May 22;4(5):e5671.
Entrez:19479060

siRNA sequence "gcaauugaggagugccuga" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "gcaauugaggagugccuga" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1654 " record
Length: 19
GC Content:53 %
Starting position: 2087
Transfection Reagent: Oligofectamine

Offtargets for "gcaauugaggagugccuga" siRNA in Human Genome sequences
See at Genbank
Pubmed:15173583
Article:Protection against lethal influenza virus challenge by RNA interference in vivo.
Authors:Tompkins SM, Lo CY, Tumpey TM, Epstein SL.
Journal:Proc Natl Acad Sci U S A. 2004 Jun 8;101(23):8682-6. Epub 2004 Jun 1.
Entrez:15173583

siRNA sequence "ugcuucaauccgaugauug" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ugcuucaauccgaugauug" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1517 " record
Length: 19
GC Content:42 %
Starting position: 44
Strain of Virus: A/PR/8/34
GenBank Acc: EF467820
Transfection Reagent: Oligofectamine

Offtargets for "ugcuucaauccgaugauug" siRNA in Human Genome sequences
See EF467820 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "gaauaucgaaaggaacagc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "gaauaucgaaaggaacagc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1528 " record
Length: 19
GC Content:42 %
Starting position: 934
Strain of Virus: A/PR/8/34
GenBank Acc: EF467824
Transfection Reagent: Oligofectamine

Offtargets for "gaauaucgaaaggaacagc" siRNA in Human Genome sequences
See EF467824 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "guccuccgaugaggacucc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "guccuccgaugaggacucc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1530 " record
Length: 19
GC Content:63 %
Starting position: 562
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "guccuccgaugaggacucc" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "ugauaacacaguucgaguc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ugauaacacaguucgaguc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1531 " record
Length: 19
GC Content:42 %
Starting position: 589
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "ugauaacacaguucgaguc" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "guccuccgaugaggacucc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "guccuccgaugaggacucc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1543 " record
Length: 19
GC Content:63 %
Starting position: 562
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "guccuccgaugaggacucc" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "ugauaacacaguucgaguc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ugauaacacaguucgaguc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1544 " record
Length: 19
GC Content:42 %
Starting position: 589
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "ugauaacacaguucgaguc" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "caggauacaccauggauac" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "caggauacaccauggauac" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1545 " record
Length: 19
GC Content:47 %
Starting position: 129
Strain of Virus: A/PR/8/34
GenBank Acc: EF467819
Transfection Reagent: Oligofectamine
Incubation Time (Hours):17

Offtargets for "caggauacaccauggauac" siRNA in Human Genome sequences
See EF467819 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "uagagagaauggugcucuc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "uagagagaauggugcucuc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1548 " record
Length: 19
GC Content:47 %
Starting position: 231
Strain of Virus: A/PR/8/34
GenBank Acc: EF467822
Transfection Reagent: Oligofectamine
Incubation Time (Hours):17

Offtargets for "uagagagaauggugcucuc" siRNA in Human Genome sequences
See EF467822 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "ccgaggucgaaacguacgu" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ccgaggucgaaacguacgu" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1550 " record
Length: 19
GC Content:58 %
Starting position: 37
Strain of Virus: A/PR/8/34
GenBank Acc: EF467824
Transfection Reagent: Oligofectamine
Incubation Time (Hours):17

Offtargets for "ccgaggucgaaacguacgu" siRNA in Human Genome sequences
See EF467824 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1521	ugcuucuugguucaacucc	Influenza A Virus	PA	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1523	uaaggcgaaucuggcgcca	Influenza A Virus	NP	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1525	ccgaggucgaaacguacgu	Influenza A Virus	M	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1526	cagauugcugacucccagc	Influenza A Virus	M	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1527	uggcuggaucgagugagca	Influenza A Virus	M	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1529	cggcuucgccgagaucaga	Influenza A Virus	NS	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1532	cgggacucuagcauacuua	Influenza A Virus	PB2	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1536	uaaggcgaaucuggcgcca	Influenza A Virus	NP	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1542	cggcuucgccgagaucaga	Influenza A Virus	NS	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1656	ggaagaacacagaucuuga	Influenza A Virus	M	MDCK	RNA	40	19479060	Blast SL	refseqs
virsi1659	ggaucuuauuucuucggag	Influenza A Virus	NP	MDCK	RNA	40	19479060	Blast SL	refseqs
virsi1654	gcaauugaggagugccuga	Influenza A Virus	PA	MDCK	Viral Load	10	15173583	Blast SL	refseqs
virsi1517	ugcuucaauccgaugauug	Influenza A Virus	PA	MDCK	Viral Load	0	12594334	Blast SL	refseqs
virsi1528	gaauaucgaaaggaacagc	Influenza A Virus	M	MDCK	Viral Load	0	12594334	Blast SL	refseqs
virsi1530	guccuccgaugaggacucc	Influenza A Virus	NS	MDCK	Viral Load	0	12594334	Blast SL	refseqs
virsi1531	ugauaacacaguucgaguc	Influenza A Virus	NS	MDCK	Viral Load	0	12594334	Blast SL	refseqs
virsi1543	guccuccgaugaggacucc	Influenza A Virus	NS	MDCK	Viral Load	0	12594334	Blast SL	refseqs
virsi1544	ugauaacacaguucgaguc	Influenza A Virus	NS	MDCK	Viral Load	0	12594334	Blast SL	refseqs
virsi1545	caggauacaccauggauac	Influenza A Virus	PB1	Embryonated Chicken Egg	Viral Load	0	12594334	Blast SL	refseqs
virsi1548	uagagagaauggugcucuc	Influenza A Virus	NP	Embryonated Chicken Egg	Viral Load	0	12594334	Blast SL	refseqs
virsi1550	ccgaggucgaaacguacgu	Influenza A Virus	M	Embryonated Chicken Egg	Viral Load	0	12594334	Blast SL	refseqs



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: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm