VIRsiRNAdb

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• VsiRNAid

Total number of Results for N are 64
Results from 50 - 75

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siRNA sequence "gaaauucaacuccuggcag" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gaaauucaacuccuggcag" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1315 " record
Length: 19
GC Content:47 %
Starting position: 28704
Transfection Reagent: Sofast
Incubation Time (Hours):24

Offtargets for "gaaauucaacuccuggcag" siRNA in Human Genome sequences
See at Genbank
Pubmed:17139181
Article:Inhibition of SARS-CoV gene expression by adenovirus-delivered small hairpin RNA.
Authors:Zhang X, Wu K, Yue X, Zhu Y, Wu J.
Journal:Intervirology. 2007;50(2):63-70. Epub 2006 Nov 30.
Entrez:17139181

siRNA sequence "aaggccaaaacagcgccgacc" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aaggccaaaacagcgccgacc" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1381 " record
Length: 21
GC Content:62 %
Starting position: 28227
GenBank Acc: NC_004734
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aaggccaaaacagcgccgacc" siRNA in Human Genome sequences
See NC_004734 at Genbank
Pubmed:15780182
Article:Inhibition of genes expression of SARS coronavirus by synthetic small interfering RNAs.
Authors:Shi Y, Yang DH, Xiong J, Jia J, Huang B, Jin YX.
Journal:Cell Res. 2005 Mar;15(3):193-200.
Entrez:15780182

siRNA sequence "guucggaugguucgggaac" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "guucggaugguucgggaac" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1688 " record
Length: 19
GC Content:58 %
Starting position: 481
GenBank Acc: MVU03668
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "guucggaugguucgggaac" siRNA in Human Genome sequences
See MVU03668 at Genbank
Pubmed:18634829
Article:Identification and mapping of a region on the mRNA of Morbillivirus nucleoprotein susceptible to RNA interference.
Authors:Keita D, Servan de Almeida R, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Nov;80(2):158-67. Epub 2008 Jul 15.
Entrez:18634829

siRNA sequence "cugcucuuggacugcauga" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "cugcucuuggacugcauga" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1946 " record
Length: 19
GC Content:53 %
Starting position: 952
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "cugcucuuggacugcauga" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "ugaggcaucuaaaaagccucg" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "ugaggcaucuaaaaagccucg" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1375 " record
Length: 21
GC Content:48 %
Starting position: 28878
GenBank Acc: NC_004742
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ugaggcaucuaaaaagccucg" siRNA in Human Genome sequences
See NC_004742 at Genbank
Pubmed:15780182
Article:Inhibition of genes expression of SARS coronavirus by synthetic small interfering RNAs.
Authors:Shi Y, Yang DH, Xiong J, Jia J, Huang B, Jin YX.
Journal:Cell Res. 2005 Mar;15(3):193-200.
Entrez:15780182

siRNA sequence "aacaaagaaggcaucguaugg" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aacaaagaaggcaucguaugg" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1378 " record
Length: 21
GC Content:43 %
Starting position: 28498
GenBank Acc: NC_004738
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aacaaagaaggcaucguaugg" siRNA in Human Genome sequences
See NC_004738 at Genbank
Pubmed:15780182
Article:Inhibition of genes expression of SARS coronavirus by synthetic small interfering RNAs.
Authors:Shi Y, Yang DH, Xiong J, Jia J, Huang B, Jin YX.
Journal:Cell Res. 2005 Mar;15(3):193-200.
Entrez:15780182

siRNA sequence "guucggaugguucgagaac" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "guucggaugguucgagaac" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1942 " record
Length: 19
GC Content:53 %
Starting position: 536
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "guucggaugguucgagaac" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "cgccgauucauggucgcuc" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "cgccgauucauggucgcuc" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1944 " record
Length: 19
GC Content:63 %
Starting position: 795
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "cgccgauucauggucgcuc" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "aaauaaucucagacaucggaa" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaauaaucucagacaucggaa" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1935 " record
Length: 21
GC Content:33 %
Starting position: 861
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaauaaucucagacaucggaa" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "ggcucuaggaucagaaaga" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "ggcucuaggaucagaaaga" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2069 " record
Length: 19
GC Content:47 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ggcucuaggaucagaaaga" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783

siRNA sequence "gcuaacaaagaaggcaucg" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gcuaacaaagaaggcaucg" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1316 " record
Length: 19
GC Content:47 %
Starting position: 28493
Transfection Reagent: Sofast
Incubation Time (Hours):24

Offtargets for "gcuaacaaagaaggcaucg" siRNA in Human Genome sequences
See at Genbank
Pubmed:17139181
Article:Inhibition of SARS-CoV gene expression by adenovirus-delivered small hairpin RNA.
Authors:Zhang X, Wu K, Yue X, Zhu Y, Wu J.
Journal:Intervirology. 2007;50(2):63-70. Epub 2006 Nov 30.
Entrez:17139181

siRNA sequence "aagagcuacccgacgaguucg" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aagagcuacccgacgaguucg" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1380 " record
Length: 21
GC Content:57 %
Starting position: 28386
GenBank Acc: NC_004737
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aagagcuacccgacgaguucg" siRNA in Human Genome sequences
See NC_004737 at Genbank
Pubmed:15780182
Article:Inhibition of genes expression of SARS coronavirus by synthetic small interfering RNAs.
Authors:Shi Y, Yang DH, Xiong J, Jia J, Huang B, Jin YX.
Journal:Cell Res. 2005 Mar;15(3):193-200.
Entrez:15780182

siRNA sequence "gacaaagaggcaagaaaaa" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "gacaaagaggcaagaaaaa" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2071 " record
Length: 19
GC Content:37 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gacaaagaggcaagaaaaa" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783

siRNA sequence "gcuaacaaagaaggcaucg" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gcuaacaaagaaggcaucg" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1325 " record
Length: 19
GC Content:47 %
Starting position: 28493
Transfection Reagent: Sofast
Incubation Time (Hours):24

Offtargets for "gcuaacaaagaaggcaucg" siRNA in Human Genome sequences
See at Genbank
Pubmed:17139181
Article:Inhibition of SARS-CoV gene expression by adenovirus-delivered small hairpin RNA.
Authors:Zhang X, Wu K, Yue X, Zhu Y, Wu J.
Journal:Intervirology. 2007;50(2):63-70. Epub 2006 Nov 30.
Entrez:17139181


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1315	gaaauucaacuccuggcag	SARS Coronavirus	N	COS-7	Protein	35	17139181	Blast SL	refseqs
virsi1381	aaggccaaaacagcgccgacc	SARS Coronavirus	N	Vero E6	mRNA	29	15780182	Blast SL	refseqs
virsi1688	guucggaugguucgggaac	Measles Virus	N	Vero	Protein	28	18634829	Blast SL	refseqs
virsi1946	cugcucuuggacugcauga	Measles Virus	N	Vero	Protein	28	18394725	Blast SL	refseqs
virsi1375	ugaggcaucuaaaaagccucg	SARS Coronavirus	N	Vero E6	mRNA	26	15780182	Blast SL	refseqs
virsi1378	aacaaagaaggcaucguaugg	SARS Coronavirus	N	Vero E6	mRNA	26	15780182	Blast SL	refseqs
virsi1942	guucggaugguucgagaac	Measles Virus	N	Vero	Protein	25	18394725	Blast SL	refseqs
virsi1944	cgccgauucauggucgcuc	Measles Virus	N	Vero	Protein	21	18394725	Blast SL	refseqs
virsi1935	aaauaaucucagacaucggaa	Henipavirus	N	BHK-21	Cell Count	20	18687361	Blast SL	refseqs
virsi2069	ggcucuaggaucagaaaga	Human Metapneumovirus	N	LLC-MK2	RNA	15	18839783	Blast SL	refseqs
virsi1316	gcuaacaaagaaggcaucg	SARS Coronavirus	N	COS-7	Protein	14	17139181	Blast SL	refseqs
virsi1380	aagagcuacccgacgaguucg	SARS Coronavirus	N	Vero E6	mRNA	8	15780182	Blast SL	refseqs
virsi2071	gacaaagaggcaagaaaaa	Human Metapneumovirus	N	LLC-MK2	RNA	7	18839783	Blast SL	refseqs
virsi1325	gcuaacaaagaaggcaucg	SARS Coronavirus	N	293T	Protein	6	17139181	Blast SL	refseqs



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: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm