VIRsiRNAdb

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Total number of Results for St. Louis Encephalitis [SLE] are 5
Results from 0 - 25

siRNA sequence "ugcucugugacauuggaga" alignment with "St. Louis Encephalitis [SLE]" virus reference Genome sequences
siRNA sequence matching with "ugcucugugacauuggaga" St. Louis Encephalitis [SLE]" Virus reference Genome sequences
Browse all the records for "St. Louis Encephalitis [SLE]" virus
Browse "virsi1225 " record
Length: 19
GC Content:47 %
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ugcucugugacauuggaga" siRNA in Human Genome sequences
See at Genbank
Pubmed:21423625
Article:Silencing early viral replication in macrophages and dendritic cells effectively suppresses flavivirus encephalitis.
Authors:Ye C, Abraham S, Wu H, Shankar P, Manjunath N.
Journal:PLoS One. 2011 Mar 15;6(3):e17889.
Entrez:21423625

siRNA sequence "caauaugcuaaaacgcggu" alignment with "St. Louis Encephalitis [SLE]" virus reference Genome sequences
siRNA sequence matching with "caauaugcuaaaacgcggu" St. Louis Encephalitis [SLE]" Virus reference Genome sequences
Browse all the records for "St. Louis Encephalitis [SLE]" virus
Browse "virsi1226 " record
Length: 19
GC Content:42 %
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "caauaugcuaaaacgcggu" siRNA in Human Genome sequences
See at Genbank
Pubmed:21423625
Article:Silencing early viral replication in macrophages and dendritic cells effectively suppresses flavivirus encephalitis.
Authors:Ye C, Abraham S, Wu H, Shankar P, Manjunath N.
Journal:PLoS One. 2011 Mar 15;6(3):e17889.
Entrez:21423625

siRNA sequence "cugugacauuggagaguca" alignment with "St. Louis Encephalitis [SLE]" virus reference Genome sequences
siRNA sequence matching with "cugugacauuggagaguca" St. Louis Encephalitis [SLE]" Virus reference Genome sequences
Browse all the records for "St. Louis Encephalitis [SLE]" virus
Browse "virsi1227 " record
Length: 19
GC Content:47 %
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "cugugacauuggagaguca" siRNA in Human Genome sequences
See at Genbank
Pubmed:21423625
Article:Silencing early viral replication in macrophages and dendritic cells effectively suppresses flavivirus encephalitis.
Authors:Ye C, Abraham S, Wu H, Shankar P, Manjunath N.
Journal:PLoS One. 2011 Mar 15;6(3):e17889.
Entrez:21423625

siRNA sequence "gucaauaugcuaaaacgcg" alignment with "St. Louis Encephalitis [SLE]" virus reference Genome sequences
siRNA sequence matching with "gucaauaugcuaaaacgcg" St. Louis Encephalitis [SLE]" Virus reference Genome sequences
Browse all the records for "St. Louis Encephalitis [SLE]" virus
Browse "virsi1224 " record
Length: 19
GC Content:42 %
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gucaauaugcuaaaacgcg" siRNA in Human Genome sequences
See at Genbank
Pubmed:21423625
Article:Silencing early viral replication in macrophages and dendritic cells effectively suppresses flavivirus encephalitis.
Authors:Ye C, Abraham S, Wu H, Shankar P, Manjunath N.
Journal:PLoS One. 2011 Mar 15;6(3):e17889.
Entrez:21423625

siRNA sequence "cggcauacagcuucaacug" alignment with "St. Louis Encephalitis [SLE]" virus reference Genome sequences
siRNA sequence matching with "cggcauacagcuucaacug" St. Louis Encephalitis [SLE]" Virus reference Genome sequences
Browse all the records for "St. Louis Encephalitis [SLE]" virus
Browse "virsi1228 " record
Length: 19
GC Content:53 %
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "cggcauacagcuucaacug" siRNA in Human Genome sequences
See at Genbank
Pubmed:21423625
Article:Silencing early viral replication in macrophages and dendritic cells effectively suppresses flavivirus encephalitis.
Authors:Ye C, Abraham S, Wu H, Shankar P, Manjunath N.
Journal:PLoS One. 2011 Mar 15;6(3):e17889.
Entrez:21423625


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1225	ugcucugugacauuggaga	St. Louis Encephalitis [SLE]	NS5	BHK-21	Cell Count	85	21423625	Blast SL	refseqs
virsi1226	caauaugcuaaaacgcggu	St. Louis Encephalitis [SLE]	C	BHK-21	Cell Count	85	21423625	Blast SL	refseqs
virsi1227	cugugacauuggagaguca	St. Louis Encephalitis [SLE]	NS5	BHK-21	Cell Count	83	21423625	Blast SL	refseqs
virsi1224	gucaauaugcuaaaacgcg	St. Louis Encephalitis [SLE]	C	BHK-21	Cell Count	79	21423625	Blast SL	refseqs
virsi1228	cggcauacagcuucaacug	St. Louis Encephalitis [SLE]	E	BHK-21	Cell Count	75	21423625	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm