BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1009
         (20 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583012.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000498.1|  Homo sapiens chromosome 8, whole genome shot...    28     907
gb|DS990732.1|  Homo sapiens SCAF_1112675837065 genomic scaf...    28     907
gb|CH003503.1|  Homo sapiens chromosome 8, whole genome shot...    28     907
gb|CH003455.1|  Homo sapiens chromosome 8, whole genome shot...    28     907
ref|NW_001839126.2|  Homo sapiens chromosome 8 genomic conti...    28     907
ref|NW_923907.1|  Homo sapiens chromosome 8 genomic contig, ...    28     907
ref|NT_167187.1|  Homo sapiens chromosome 8 genomic contig, ...    28     907
ref|NC_000008.10|  Homo sapiens chromosome 8, GRCh37.p2 prim...    28     907
ref|AC_000140.1|  Homo sapiens chromosome 8, alternate assem...    28     907
ref|AC_000051.1|  Homo sapiens chromosome 8, alternate assem...    28     907

1_0          1        actccaccatagatcactcc 20
GL583012     8884388  ..................g. 8884369
CM000498     16140379 ..................g. 16140360
DS990732     4026289  ..................g. 4026308
CH003503     16886573 ..................g. 16886554
CH003455     16290887 ..................g. 16290868
NW_001839126 4026204  ..................g. 4026223
NW_923907    5130085  ..................g. 5130066
NT_167187    5454756  ..................g. 5454737
NC_000008    17596610 ..................g. 17596591
AC_000140    16140596 ..................g. 16140577
AC_000051    16562247 ..................g. 16562228

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 20,730,822
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 20
Length of database: 31,910,071,267
Length adjustment: 14
Effective length of query: 6
Effective length of database: 31,910,050,337
Effective search space: 191460302022
Effective search space used: 191460302022
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)