BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1017
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583193.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000513.1|  Homo sapiens chromosome X, whole genome shot...    28     907
gb|DS990831.1|  Homo sapiens SCAF_1112675837194 genomic scaf...    28     907
gb|CH003470.1|  Homo sapiens chromosome X, whole genome shot...    28     907
emb|CT009680.1|  Human chromosome X complete sequence              28     907
ref|NW_927720.1|  Homo sapiens chromosome X genomic contig, ...    28     907
ref|NW_001842395.2|  Homo sapiens chromosome X genomic conti...    28     907
ref|NT_011786.16|  Homo sapiens chromosome X genomic contig,...    28     907
ref|NC_000023.10|  Homo sapiens chromosome X, GRCh37.p2 prim...    28     907
ref|AC_000155.1|  Homo sapiens chromosome X, alternate assem...    28     907
ref|AC_000066.1|  Homo sapiens chromosome X, alternate assem...    28     907

1_0          2         aggtcccctagaagaagaac 21
GL583193     2777621   .........g.......... 2777640
CM000513     108004475 .........g.......... 108004494
DS990831     666222    .........g.......... 666203
CH003470     113257095 .........g.......... 113257114
CT009680     117598347 .........g.......... 117598366
NW_927720    2776788   .........g.......... 2776807
NW_001842395 666217    .........g.......... 666198
NT_011786    2778436   .........g.......... 2778455
NC_000023    118510726 .........g.......... 118510745
AC_000155    108004396 .........g.......... 108004415
AC_000066    118965446 .........g.......... 118965465

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 30,586,342
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)