BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1021
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582984.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000500.1| Homo sapiens chromosome 10, whole genome sho... 28 907
gb|DS990677.1| Homo sapiens SCAF_1112675837177 genomic scaf... 28 907
gb|CH003505.1| Homo sapiens chromosome 10, whole genome sho... 28 907
gb|CH003457.1| Homo sapiens chromosome 10, whole genome sho... 28 907
ref|NW_924584.1| Homo sapiens chromosome 10 genomic contig,... 28 907
ref|NT_008705.16| Homo sapiens chromosome 10 genomic contig... 28 907
ref|NW_001837931.2| Homo sapiens chromosome 10 genomic cont... 28 907
ref|NC_000010.10| Homo sapiens chromosome 10, GRCh37.p2 pri... 28 907
ref|AC_000142.1| Homo sapiens chromosome 10, alternate asse... 28 907
ref|AC_000053.1| Homo sapiens chromosome 10, alternate asse... 28 907
1_0 1 aacctccaatcactcaccaa 20
GL582984 10259387 ...a................ 10259368
CM000500 27903161 ...a................ 27903180
DS990677 2879129 ...a................ 2879110
CH003505 29013247 ...a................ 29013266
CH003457 28255615 ...a................ 28255634
NW_924584 27949811 ...a................ 27949830
NT_008705 28126394 ...a................ 28126413
NW_001837931 2878845 ...a................ 2878826
NC_000010 28186394 ...a................ 28186413
AC_000142 27903132 ...a................ 27903151
AC_000053 27949811 ...a................ 27949830
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 23,660,298
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)