BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1027
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 29 348
gb|GL583017.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|DS990657.1| Homo sapiens SCAF_1112675837360 genomic scaf... 29 348
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 29 348
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 29 348
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 29 348
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 29 348
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 29 348
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 29 348
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 29 348
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 29 348
gb|GL582988.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|DS990673.1| Homo sapiens SCAF_1112675837361 genomic scaf... 28 907
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 907
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 907
emb|CT009680.1| Human chromosome X complete sequence 28 907
ref|NW_927700.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NW_001842360.1| Homo sapiens chromosome X genomic conti... 28 907
ref|NT_167197.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 907
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 907
1_0 1 aacatggagaacatcacatca 21
CM000494 183653004 ........c............ 183652984
GL583017 16477386 ........c............ 16477366
DS990657 48134333 ........c............ 48134313
CH003499 188473549 ........c............ 188473529
CH003451 184731868 ........c............ 184731848
NW_001838921 48133814 ........c............ 48133794
NW_922217 67481517 ........c............ 67481497
NT_016354 112462002 ........c............ 112461982
NC_000004 187914281 ........c............ 187914261
AC_000136 183651575 ........c............ 183651555
AC_000047 185224038 ........c............ 185224018
GL582988 13775532 ..................g. 13775513
CM000513 15657775 ..................g. 15657756
DS990673 9448741 ..................g. 9448722
CH003518 11871141 ..................g. 11871160
CH003470 18666310 ..................g. 18666291
CT009680 17455706 ..................g. 17455687
NW_927700 16418210 ..................g. 16418191
NW_001842360 9448771 ..................g. 9448752
NT_167197 15782371 ..................g. 15782352
NC_000023 17900609 ..................g. 17900590
AC_000155 15657810 ..................g. 15657791
AC_000066 22019928 ..................g. 22019909
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,279,330
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 1000.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)