BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1027
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000494.1|  Homo sapiens chromosome 4, whole genome shot...    29     348
gb|GL583017.1|  Homo sapiens unplaced genomic scaffold scaff...    29     348
gb|DS990657.1|  Homo sapiens SCAF_1112675837360 genomic scaf...    29     348
gb|CH003499.1|  Homo sapiens chromosome 4, whole genome shot...    29     348
gb|CH003451.1|  Homo sapiens chromosome 4, whole genome shot...    29     348
ref|NW_001838921.1|  Homo sapiens chromosome 4 genomic conti...    29     348
ref|NW_922217.1|  Homo sapiens chromosome 4 genomic contig, ...    29     348
ref|NT_016354.19|  Homo sapiens chromosome 4 genomic contig,...    29     348
ref|NC_000004.11|  Homo sapiens chromosome 4, GRCh37.p2 prim...    29     348
ref|AC_000136.1|  Homo sapiens chromosome 4, alternate assem...    29     348
ref|AC_000047.1|  Homo sapiens chromosome 4, alternate assem...    29     348
gb|GL582988.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000513.1|  Homo sapiens chromosome X, whole genome shot...    28     907
gb|DS990673.1|  Homo sapiens SCAF_1112675837361 genomic scaf...    28     907
gb|CH003518.1|  Homo sapiens chromosome X, whole genome shot...    28     907
gb|CH003470.1|  Homo sapiens chromosome X, whole genome shot...    28     907
emb|CT009680.1|  Human chromosome X complete sequence              28     907
ref|NW_927700.1|  Homo sapiens chromosome X genomic contig, ...    28     907
ref|NW_001842360.1|  Homo sapiens chromosome X genomic conti...    28     907
ref|NT_167197.1|  Homo sapiens chromosome X genomic contig, ...    28     907
ref|NC_000023.10|  Homo sapiens chromosome X, GRCh37.p2 prim...    28     907
ref|AC_000155.1|  Homo sapiens chromosome X, alternate assem...    28     907
ref|AC_000066.1|  Homo sapiens chromosome X, alternate assem...    28     907
1_0          1         aacatggagaacatcacatca 21
CM000494     183653004 ........c............ 183652984
GL583017     16477386  ........c............ 16477366
DS990657     48134333  ........c............ 48134313
CH003499     188473549 ........c............ 188473529
CH003451     184731868 ........c............ 184731848
NW_001838921 48133814  ........c............ 48133794
NW_922217    67481517  ........c............ 67481497
NT_016354    112462002 ........c............ 112461982
NC_000004    187914281 ........c............ 187914261
AC_000136    183651575 ........c............ 183651555
AC_000047    185224038 ........c............ 185224018
GL582988     13775532  ..................g.  13775513
CM000513     15657775  ..................g.  15657756
DS990673     9448741   ..................g.  9448722
CH003518     11871141  ..................g.  11871160
CH003470     18666310  ..................g.  18666291
CT009680     17455706  ..................g.  17455687
NW_927700    16418210  ..................g.  16418191
NW_001842360 9448771   ..................g.  9448752
NT_167197    15782371  ..................g.  15782352
NC_000023    17900609  ..................g.  17900590
AC_000155    15657810  ..................g.  15657791
AC_000066    22019928  ..................g.  22019909
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,279,330
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 1000.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)