BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1029
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|GL583016.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583029.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|DS990669.1| Homo sapiens SCAF_1112675837377 genomic scaf... 28 907
gb|DS990678.1| Homo sapiens SCAF_1112675837219 genomic scaf... 28 907
gb|DS990733.1| Homo sapiens SCAF_1112675837080 genomic scaf... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|DS486040.1| Homo sapiens SCAF_1103279188274 genomic scaf... 28 907
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
ref|NW_001838987.1| Homo sapiens chromosome 6 genomic conti... 28 907
ref|NW_001838579.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_001839128.2| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_923184.1| Homo sapiens chromosome 6 genomic contig, ... 28 907
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_923907.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NT_167187.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NT_007299.13| Homo sapiens chromosome 6 genomic contig,... 28 907
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 2 atgttgcccaaggtcttaca 21
CM000491 58342396 .................t.. 58342377
GL583016 7958832 .................t.. 7958813
GL583029 12048275 ...............a.... 12048294
CM000496 81027910 ...............a.... 81027929
CM000498 32455266 ...............a.... 32455285
DS990669 23451763 .................t.. 23451782
DS990678 13266674 ...............a.... 13266693
DS990733 4855519 ...............a.... 4855500
CH003496 58045918 .................t.. 58045899
DS486040 13266891 ...............a.... 13266910
CH003501 83448459 ...............a.... 83448478
CH003453 80427307 ...............a.... 80427326
CH003455 32585350 ...............a.... 32585369
NW_001838987 13206246 ...............a.... 13206265
NW_001838579 23452219 .................t.. 23452238
NW_001839128 4855661 ...............a.... 4855642
NW_923184 16301903 ...............a.... 16301922
NW_921351 34381126 .................t.. 34381107
NW_923907 21441564 ...............a.... 21441583
NT_167187 21782070 ...............a.... 21782089
NT_007299 21919837 ...............a.... 21919856
NT_032977 30203375 .................t.. 30203356
NC_000001 60231457 .................t.. 60231438
NC_000008 33923924 ...............a.... 33923943
NC_000006 83800003 ...............a.... 83800022
AC_000140 32455345 ...............a.... 32455364
AC_000138 81028044 ...............a.... 81028063
AC_000133 58342503 .................t.. 58342484
AC_000051 32873726 ...............a.... 32873745
AC_000049 84233299 ...............a.... 84233318
AC_000044 58520268 .................t.. 58520249
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,110,575
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 1000.0: 31
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 31
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)