BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1030
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000491.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|GL583016.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990669.1|  Homo sapiens SCAF_1112675837377 genomic scaf...    28     907
gb|CH003496.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|CH003448.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
ref|NW_001838579.2|  Homo sapiens chromosome 1 genomic conti...    28     907
ref|NW_921351.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NT_032977.9|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NC_000001.10|  Homo sapiens chromosome 1, GRCh37.p2 prim...    28     907
ref|AC_000133.1|  Homo sapiens chromosome 1, alternate assem...    28     907
ref|AC_000044.1|  Homo sapiens chromosome 1, alternate assem...    28     907

1_0          2        agaggactcttggactctct 21
CM000491     67085415 .t.................. 67085396
GL583016     16647723 .t.................. 16647704
DS990669     14708744 .t.................. 14708763
CH003496     69223685 .t.................. 69223704
CH003448     68162316 .t.................. 68162297
NW_001838579 14709201 .t.................. 14709220
NW_921351    43126834 .t.................. 43126815
NT_032977    38947673 .t.................. 38947654
NC_000001    68975755 .t.................. 68975736
AC_000133    67085521 .t.................. 67085502
AC_000044    67265976 .t.................. 67265957

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 20,707,654
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)